首页   按字顺浏览 期刊浏览 卷期浏览 Structure of the recombinantParamecium tetraureliacalmodulin at 1.68 Å resolution
Structure of the recombinantParamecium tetraureliacalmodulin at 1.68 Å resolution

 

作者: C. Ban,   B. Ramakrishnan,   K.‐Y. Ling,   C. Kung,   M. Sundaralingam,  

 

期刊: Acta Crystallographica Section D  (WILEY Available online 1994)
卷期: Volume 50, issue 1  

页码: 50-63

 

ISSN:1399-0047

 

年代: 1994

 

DOI:10.1107/S0907444993007991

 

出版商: International Union of Crystallography

 

数据来源: WILEY

 

摘要:

The crystal structure of the recombinant calmodulin fromParamecium tetraurelia(rPCaM,Mr= 16 700, 148 residues) has been determined at 1.68 Å resolution. X‐ray intensity data were collected at 263 K using a Siemens–Nicolet area detector and CuKα radiation from a rotating‐anode source. A total of 35 936 observations were processed withXENGEN1.3 and scaled to yield 16 255 unique reflections withRsymm(I) of 4.1%. The crystals are triclinic, with unit‐cell dimensionsa= 29.89, b = 53.42,c= 25.35 Å, α = 93.67, β = 96.88, γ = 89.24°, space groupP1, with one molecule in the unit cell. The atomic coordinates of the wild‐typeParameciumcalmodulin (PCaM) studied in our laboratory provided the starting model. Refinement of the structure byX‐PLORand refitting it into omit maps yielded anRvalue of 0.194 for 15 965 reflections greater than 3σ(F) in the 6.0–1.68 Å resolution range. The final model contained 1165 protein atoms for all of the 148 residues, four Ca2+ions, and 172 water molecules. The dumbbell structure has seven α‐helices including a long 7.8 turn central helix connecting the two terminal domains each containing twoEF‐hand (helix–loop–helix motif) calcium‐binding sites. The loops within each pair ofEF‐hand motifs in the N‐ and C‐terminal domains are brought into juxtaposition to form a pair of hydrogen‐bonded antiparallel β‐sheets which are extended at either ends by water bridges. The four calcium‐bindingEF‐hands are superposable with r.m.s. deviations of 0.31–0.79 Å. The best agreement is between site 1 and site 3 and the worst agreement is between site 1 and 4. The largest differences are in the ninth and tenth residues of the calcium‐binding loops probably because of their involvement in the mini β‐sheets. The calcium coordination distances vary between 2.04 and 2.69 Å, average 2.34 Å. The rPCaM and wild‐type PCaM have an r.m.s. deviation of 0.36 Å for equivalent Cαatoms. The side chains of Lys13 and Lys115 are more extended in rPCaM compared to the wild type where the post‐translational modified di‐ and tri‐methylated lysine residues are more folded. The sequence of PCaM differs from those of mammalian (MCaM) andDrosophilacalmodulin (DCaM), but the overall structures are very similar, with r.m.s,. deviations of 0.44 and 1.68 Å for equivalent Cαatoms, respectively. However, in rPCaM, the first four N‐terminal residues stretch out and make intermolecular crystal contacts, in contrast to those in recombinantDrosophilacalmodulin (rDCaM), they stretch out in the opposite direction and towards the second calcium‐binding site (see note below), while in MCaM and wild‐type PCaM, the N‐terminal residues are not visible. The central helix in rPCaM has all its backbone hydrogen bonds i

 

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