Active turbulence in lakes is confined to the surface mixed layer, to boundary layers on the lake sides and bottom, and to turbulent patches in the interior. The density stratification present in most lakes fundamentally alters the pathways connecting external mechanical energy inputs, for example by wind, with its ultimate fate as dissipation to heat; the density stratification supports internal waves and intrusions that distribute the input energy throughout the lake. Intrusions may be viewed as internal waves with zero horizontal wavenumber and are formed each time localised mixing occurs in a stratified fluid. Intrusions are also formed in the epilimnion by differential heating or cooling and by differential deepening. The fraction of lake volume below the diurnal mixed layer that is subject to active turbulence is very small, probably of the order of 1% or less in small to medium‐sized lakes. By contrast, in the surface mixed layer, turbulence is less intermittent and maintains phytoplankton in suspension and controls their exposure to the underwater solar flux. Nutrient transport to individual cells depends not only on the cell Reynolds number but also on the Peclet number, which, if large, implies enhanced mass transfer above purely diffusive values.