A stydy ofRhizobium leguminosarumbiovartrifoliipopulations from soil extracts using randomly amplified polymorphic DNA profiles
作者:
Malcolm Dye,
Leif Sket,
Lance R. Mytton,
Ann Cresswell,
Stephen P. Harrison,
John J. Dooley,
期刊:
Canadian Journal of Microbiology
(NRC Available online 1995)
卷期:
Volume 41,
issue 4-5
页码: 336-344
ISSN:0008-4166
年代: 1995
DOI:10.1139/m95-046
出版商: NRC Research Press
数据来源: NRC
摘要:
This study has shown that isolates ofRhizobium leguminosarumbiovartrifoliican be grouped on the basis of their randomly amplified polymorphic DNA (RAPD) fragment patterns. Evidence is presented that these groups are not entirely arbitrary but are consistent with other genetic and phenotypic characteristics. RAPD analysis has been used to assess the efficiency of a dispersion and differential centrifugation procedure used to extract bacteria from soil. Whilst the major groups ofRhizobiumisolates in soils were also found in the extracts, some of the others were missing. This is also reflected in the finding, made by measuring abundance of organisms, that as manyRhizobiumisolates are left in the residue as appear in the supernatant; more dispersion steps, possibly with different dispersants, are needed to maximize extraction. The technique has also demonstrated that dispersing soil by simply shaking it in water not only underestimates the numbers ofRhizobiumisolates present but also masks much of their diversity.Key words:Rhizobium, DNA amplification, random primers, bacterial extraction.
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