This paper advocates the use of GIS for the evaluation of the vulnerability of coastal waters and presents a method for mapping their vulnerability to algal blooms. The method incorporates probability mapping of parameters used to describe coastal waters and fuzzy sets. To allow the modelling of processes where some components cannot substitute for other components the 'no trade off' convex combination formula is proposed. The maps of vulnerability for the Gulf of Gdansk, which were created using this method, may be used to find out which rivers and water discharges play a dominant role in eutrophication.