Semiempirical energy calculations on model compounds of polypeptides. Crystal structures ofDL‐acetylleucineN‐methylamide andDL‐acetyl‐amino‐n‐butyric acidN‐methylamide
作者:
Dino R. Ferro,
Jan Hermans,
期刊:
Biopolymers
(WILEY Available online 1972)
卷期:
Volume 11,
issue 1
页码: 105-117
ISSN:0006-3525
年代: 1972
DOI:10.1002/bip.1972.360110108
出版商: Wiley Subscription Services, Inc., A Wiley Company
数据来源: WILEY
摘要:
AbstractThe sumEof the packing and conformation energies of the crystals ofDL‐acetylleucineN‐methylamide (ALNMA) andDL‐acetyl‐α‐amino‐n‐butyric acidN‐methylamide (ABAMA) is calculated as a function of the crystallographic parameters and the conformational angles. The intermolecular energy is assumed to be the pairwise sum of nonbonded and electrostatic atomic interactions, while both these terms and intrinsic terms describing barriers of internal rotation contribute to the intramolecular energy. For ALNMAEis minimized with respect to 18 parameters: the minimum found when starting from the experimental structure agrees with this within 0.07 Å and 3°, except for one angle which deviates by 6° the average deviations of the atomic coordinates are\documentclass{article}\pagestyle{empty}\begin{document}$ |\overline {\Delta x|} = 0.02,|\overline {\Delta y|} = 0.07,|\overline {\Delta z|} = 0.08 $\end{document}Å. Another minimum with about the same energy shows slightly worse agreement. A comparison between different sets of nonbonded functions is made. The prediction of conformation and intermolecular packing of ABAMA is attempted on the basis of the knowledge of the unit cell and the space group. In agreement with available experimental data it is found that only one‐di‐mensional arrays of molecules linked by pairs of hydrogen bonds are compatible with the unit cell. The more stable of two possible conformations of the main chain agrees approximately with the experimental conformation. The calculation is not conclusive with regard to the side‐chain conformation and the packing of non
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