Mechanistic studies on the phosphoramidite coupling reaction in oligonucleotide synthesis. I. Evidence for nudeophilic catalysis by tetrazole and rate variations with the phosphorus substituents
作者:
Bjarne H.Dahl,
JohnNielsen,
OttoDahl,
期刊:
Nucleic Acids Research
(OUP Available online 1987)
卷期:
Volume 15,
issue 4
页码: 1729-1743
ISSN:0305-1048
年代: 1987
出版商: Oxford University Press
数据来源: OUP
摘要:
Tetrazole catalyzed reactions of a series of phosphoramidites, 5′-O- DMTdT-3′-O-P(OR1)NRNR22(1a-h), with 3′O-SiButPh2-6-N-benzoyl-dA (2a) in acetonitrite solution have been studied. It is found that the coupling rate depends very much on whether tetrazole is added before or after 2a, and that dialkylammonium tetrazolide salts are inhibitors. These and other facts are evidence that the reactions are subjected to nucleophilic catalysis by tetrazole, in addition to acid catalysis. The rate variations with phosphorus substituents of 1a-h are NEt2>NRr12>N(CH2CH2)O>NMePh, and OMe>OCH2CH2CN>OCHMeCH2CN>OCMe2CH2CN>>OC6H4Cl. The inhibitor properties of dialkylammonium tetrazolides have practical consequences for the efficiency of DNA syntheses, whenin situprepared phosphramidites are used; the same would apply for segmented simultaneous syntheses or syntheses where recycling is perf
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