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Mechanistic studies on the phosphoramidite coupling reaction in oligonucleotide synthesis. I. Evidence for nudeophilic catalysis by tetrazole and rate variations with the phosphorus substituents

 

作者: Bjarne H.Dahl,   JohnNielsen,   OttoDahl,  

 

期刊: Nucleic Acids Research  (OUP Available online 1987)
卷期: Volume 15, issue 4  

页码: 1729-1743

 

ISSN:0305-1048

 

年代: 1987

 

出版商: Oxford University Press

 

数据来源: OUP

 

摘要:

Tetrazole catalyzed reactions of a series of phosphoramidites, 5′-O- DMTdT-3′-O-P(OR1)NRNR22(1a-h), with 3′O-SiButPh2-6-N-benzoyl-dA (2a) in acetonitrite solution have been studied. It is found that the coupling rate depends very much on whether tetrazole is added before or after 2a, and that dialkylammonium tetrazolide salts are inhibitors. These and other facts are evidence that the reactions are subjected to nucleophilic catalysis by tetrazole, in addition to acid catalysis. The rate variations with phosphorus substituents of 1a-h are NEt2>NRr12>N(CH2CH2)O>NMePh, and OMe>OCH2CH2CN>OCHMeCH2CN>OCMe2CH2CN>>OC6H4Cl. The inhibitor properties of dialkylammonium tetrazolides have practical consequences for the efficiency of DNA syntheses, whenin situprepared phosphramidites are used; the same would apply for segmented simultaneous syntheses or syntheses where recycling is perf

 

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