Different conformations of double‐stranded nucleic acid in solution as revealed by circular dichroism
作者:
V. I. Ivanov,
L. E. Minchenkova,
A. K. Schyolkina,
A. I. Poletayev,
期刊:
Biopolymers
(WILEY Available online 1973)
卷期:
Volume 12,
issue 1
页码: 89-110
ISSN:0006-3525
年代: 1973
DOI:10.1002/bip.1973.360120109
出版商: Wiley Subscription Services, Inc., A Wiley Company
数据来源: WILEY
摘要:
AbstractConformation of two‐stranded DNA in H2O–methanol, H2O–ethanol, H2O–isopropanol, and H2O–dioxane solutions at different concentrations of alkaline ions has been studied with the aid of circular dichroism. The following conclusions are drawn:The conformation of DNA in H2O and H2O–methanol belongs to a family of B forms (B, C, T forms are the representatives of the family). The magnitude of the winding angle between adjacent base pairs (θ) is determined by the concentration and type of the cations. In H2O the cation action is nonspecific and leads to an increase in θ value. In 80% methanol the ions act specifically, Cs+being to stabilize a form with a greater θ value, and Li+being with a lesser one. The total θ change is likely within the limits of 33° ⩽ θ ⩽ 45°.At high content of ethanol, isopropanol, or dioxane (∼80%), but not with methanol, and in low ionic strength the conformation of DNA belongs to a family of A forms (A form is one of the members of the family) and is specified by the concentration and type of cation involved. The two‐stranded regions of RNA in H2O are also of A type and winds with the rise of cation concentration. The range of θ variation is not narrower than 30° ⩽ θ 33°.The conformational transitions within the families (induced by ions) are of non‐cooperative pattern, wheras the transitions between the families (induced by nonpolar component) are of cooperative pattern. The effect of cations, when specific, is discussed on the basis of steric correspondence between the width of DNA narrow groove
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