The formation of a colored indophenol complex is commonly used as a quantitative measure of the ammonium content of soil extracts. The potential interference with ammonium determination from co‐extracted amino acids was examined. The extent of color development was examined for 22 amino acids by subjecting pure solutions to ammonium determination by both the indophenol method and steam distillation. Apparent detection of amino acid as ammonium ranged from 0 to 94 % of total nitrogen for the indophenol procedure, whereas steam distillation resulted in little apparent ammonium recovery. With the exception of threonine, the extent of color development was inversely related to amino acid molecular weight. The range in recoveries for the indophenol procedure suggests both size and composition of the co‐extracted amino acid pool is important in determining the extent of interference.