High pretilt angles of nematic liquid crystals (NLC) have been successfully generated on rubbed organic solvent soluble polyimide (PI) surfaces with a helical backbone structure and trifluoromethyl moieties. We have found that the pretilt angle of in 4-n-penty-4-cyanobiphenyl (5CB) on rubbed PI surfaces with trifluoromethyl moieties attached to the lateral benzene rings is larger compared to that on rubbed PI surfaces with trifluoromethyl moieties attached to the polymer backbone. The observed pretilt angle of 5CB on unidirectionally rubbed PI surfaces with trifluoromethyl moieties attached to the lateral benzene rings is about 15 degrees in the wide rubbing region. From these results, it is expected that the microscopic surface structure of the polymer strongly contributes to the pretilt angle generation of the LCs at the surface.