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1. |
Front cover |
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Analyst,
Volume 86,
Issue 1029,
1961,
Page 053-054
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ISSN:0003-2654
DOI:10.1039/AN96186FX053
出版商:RSC
年代:1961
数据来源: RSC
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2. |
Contents pages |
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Analyst,
Volume 86,
Issue 1029,
1961,
Page 055-056
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ISSN:0003-2654
DOI:10.1039/AN96186BX055
出版商:RSC
年代:1961
数据来源: RSC
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3. |
Front matter |
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Analyst,
Volume 86,
Issue 1029,
1961,
Page 247-260
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ISSN:0003-2654
DOI:10.1039/AN96186FP247
出版商:RSC
年代:1961
数据来源: RSC
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4. |
Back matter |
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Analyst,
Volume 86,
Issue 1029,
1961,
Page 261-274
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ISSN:0003-2654
DOI:10.1039/AN96186BP261
出版商:RSC
年代:1961
数据来源: RSC
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5. |
Proceedings of the Society for Analytical Chemistry |
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Analyst,
Volume 86,
Issue 1029,
1961,
Page 765-766
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摘要:
DECEMBER, 1961 Vol. 86, 1029 THE ANALYST PROCEEDINGS OF THE SOCIETY FOR ANALYTICAL CHEMISTRY DEATH Lewis Eynoii, WE record with regret the death of NORTH OF ENGLAND SECTION A JOINT Meeting of the North of England Section of the Society and the North Lancashire Section of the Royal Institute of Chemistry was held at 7.30 p.m. on Friday, October 27th, 1961, a t the College for Further Education, Torrisholme Road, Lancaster. The Chair was taken by the Chairman of the North Lancashire Section, Mr. T. E. V. Horsley, B.Sc., F.R.I.C. The following paper was presented and discussed: “The Analysis of Edible Oils Con- taminated with Synthetic Ester Lubricants,” by G. B. Crump, I<.%., A.K.I.C. SCOTTISH SECTION Ax Ordinary Meeting of the Section was held a t 4 p.m. on Friday, October 20th, 1961, in the Chemistry Department, the University, Aberdeen.The Chair was taken by the Chairman of the Section, Mr. A. F. Williams, B.Sc., F.R.I.C. The following papers were presented and discussed: “Stannous Acetate as a Primary Standard,” by W. Moser, B.Sc., and W. B. Simpson, B.Sc. ; “Some Seldom-remembered Aspects of Analytical Technique,” by R. A. Chalmers, B.Sc., Ph.D. ; “The Analytical Chemistry of Technetium and Rhenium,” by R. J. Magee, M.Sc., Ph.D., A.R.I.C. (see summaries below). The meeting was preceded at 2.15 p.m. by a tour of the Chemistry Department, Abercieen University, by kind invitation of Professor G. M. Burnett. STANNOUS ACETATE AS A PRIMARY STANDARD MR. W. B. SIMPSON discussed the need for a pure, stable and readily soluble stannous tin compound.Results showed that stannous acetate, purified by vacuum sublimation, was a suitable primary standard in tin analysis. He gave a comparison of five different sources of stannous tin. SOME SELDOM-REMEMBERED ASPECTS OF ANALYTICAL TECHXIQIX DR. R. A. CHALMEKS said that there were practically no channels of communication for discussion of minor sources of error, especially those that were conveniently forgotten. The information that existed was scattered over various texts, and attempts at publica- tion in learned journals were usually blocked by refusal to accept “text-book material.” Dr. Chalrners made this coinniunication in an attempt to rectify this state of affairs and to draw attention t o (or remind people of) such errors 3s those that occurred in weight calibration, instrument reading, dilution, desiccation, and so on.765766 PROCEEDINGS [Vol. 86 THE ANALYTICAL CHEMISTRY OF TECHNETIUM AND RHENIUM DR. R. J. MAGEE said that, along with manganese, technetium and rhenium con- stituted group VIIA of the periodic classification. Although rhenium had been discovered in 1925 by Noddack, Tacke and Berg, and technetium had first been obtained in 1937 by Perrier and Segrk through neutron bombardment of a molybdenum target, the analytical chemistry of the two elements remained comparatively unknown until recent years. In this lecture Dr. Magee presented aspects of the analytical chemistry of thzse two elements, and in particular, work with reductants, such as bismuth amalgam. By this the 5-valent state of rhenium was established and the first satisfactory titrimetric method for the element developed. The use of bismuth amalgam and other reductants with technetium also produced the first non-radiochemical methods of detecting the element and led to new colorimetric methods for its determination.WESTERN SECTION AND MICROCHEMISTRY GROUP A JOINT Meeting of the Western Section and Microchemistry Group of the Society with the Mid-Southern Counties Section of the Royal Institute of Chemistry was held at 7.45 p.m. on Friday, October 20th, 1961, at the Red Lion Hotel, Salisbury, Wiltshire. The Chair was taken by the Chairman of the Microchemistry Group, Mr. C. Whalley, B.Sc., F.R.I.C. The subject of the meeting was “Trace Analysis in Archaeology” and the following papers were presented and discussed : “Analytical Techniques in Archaeology and the Arts,” by E.T. Hall, M.A., D.Phi1.; “The Applications of Spectroscopy to the Study of Roman and Medieval Glazed Pottery,” by J. MT. G. Musty, A.R.I.C. The meeting was preceded at 2.30 p.m. by a visit to Avebury Museum and Prehistoric Circle. MIDLANDS SECTION AN Ordinary Meeting of the Section was held at 7 p.m. on Thursday, October 26th, 1963, at the Nottingham and District Technical College, Burton Street, Nottingham. The Chair was taken by the Chairman of the Section, Dr. H. C. Smith, M.Sc., F.R.I.C. The following paper was presented and discussed: “Aquametry,” by J. H. Thompson, B.Sc., Ph.D., A.R.I.C. MICROCHEMISTRY GROUP THE thirty-first London Discussion Meeting of the Group was held at 6.30 p.m.on Wednesday, November 8th, 1961, at “The Feathers,” Tudor Street, London, E.C.4. The Chair was taken by the Chairman of the Group, Mr. C. Whalley, B.Sc., F.R.I.C. The subject for discussion was “Derivatography as a New Thermoanalytical Method,” and it was opened by Professor L. Erdey, of the University of Budapest. PHYSICAL METHODS GROUP THE seventy-ninth Ordinary Meeting of the Group was held at 6 p.m. on Tuesday, October 24th, 1961, in the Research Department Lecture Theatre, Boots Pure Drug Co. Ltd., Penny- foot Street, Nottingham. The Chair was taken by the Chairman of the Group, Dr. G. W. C . Milner, F.R.I.C., A.1nst.P. The subject of the meeting was “Determination of Parricle Size,” and the following papers were presented and discussed: “Recent Investigations into Sedimentation Methods of Particle Size Analysis,” by B. H. Kaye, M.SC. ; “Automatic Scanning Instruments for Counting and Sizing Microscopic Particles,” by W. H. Walton, B.Sc., F.1nst.P. ; “The Use of an Electro- lytic Resistivity Method (Coulter Counter) for Particle Size Analysis,” by I. C . Edmundson, B .Phann., M.P.S. The meeting was preceded at 2.30 p.m. by a tour of the Standards Department Labora- tories of Boots Pure Drug Co. Ltd., Beeston.
ISSN:0003-2654
DOI:10.1039/AN9618600765
出版商:RSC
年代:1961
数据来源: RSC
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6. |
Obituary |
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Analyst,
Volume 86,
Issue 1029,
1961,
Page 767-767
A. A. Eldridge,
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December, 19611 PROCEEDINGS 767 0 bituary HENRY VINCENT AIRD BRISCOE HENRY VINCENT AIRD BRISCOE, who died on September 24th, 1961, his seventy-third birthday, was a pupil at the City of London School before entering the Royal College of Science where, in 1906, he was one of the last group of students to work in the chemistry laboratories in the “old College” in Exhibition Road, South Kensington. After graduation he was appointed to the academic staff, first as assistant to Professor Sir Edward Thorpe, then engaged in the revision of Thorpe’s Dictionary of Applied Chemistry, and later as Demonstrator. He was a most conscientious teacher, and an indefatigable investigator in days when the facilities available were scanty-many a night was spent at the blowpipe or the workshop bench-and when the young lecturer (or indeed often the professor either) had no postgraduate student” working under his guidance.His early researches consisted of accurate determinations of atomic weights, a subject which also engaged his attention in later years as Professor of Inorganic and Physical Chemistry at King’s College (then Armstrong College), Newcasge (1921-32). Returning to Imperial College as Professor of Inorganic Chemistry he continued his investigations into the chemical behaviour of deuterium, fluorine, rhenium and germanium and their compounds. Work that he regarded as specially important related to the incidence of silicosis and involved microchemical analysis, which reflected his skill in conducting ope& tions of high precision. Indeed he was one of the founders of the Microchemistry Group of the Society for Analytical Chemistry, of which he became a member in 1944 and in the same year was elected the first Chairman of the Group.By the same token he always took a particular interest in the analytical section of his department at Imperial College, where meanwhile he had become Director of the Laboratories for Inorganic and Physical Chemistry (1938-54) ; he regarded as of prime importance training in meticulous experimentation and precise measurement, and was instrumental in improx-ing the facilities available there for micro, semi-micro and physical methods of analysis. Professor Briscoe had held office in the Chemical Society, in the Society of Chemical Industry and in the Royal Institute of Chemistry, of which he had been a Vice-president for eleven years.Both during his active academic career and afterwards, when he was a guest of his old department, he kept in close touch with industrial aspects of his science, and was frequently called into consultation on a variety of topics, principally the chemistry of coke, paints, water supplies and dairy products. Throughout the 193945 War his services were freely offered to, and used by, Government agencies; in the years following the War he encouraged efforts to place the training of science laboratory technicians on a more satisfactory basis, and was himself Chairman of the Imperial College Technician Training Committee, of a joint Committee of the University of London Colleges having similar responsibilities, and of the National Joint Committee concerned with the recruitment, training and “deferment” of technicians. Professor Briscoe will be remembered by all his associates not only as a distinguished chemist but also as a loyal colleague, full of human kindness as well as of worldly wisdom, and ever ready to extend a helping hand when the need arose. A. A. ELDRIDGE
ISSN:0003-2654
DOI:10.1039/AN9618600767
出版商:RSC
年代:1961
数据来源: RSC
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7. |
The determination of nucleic acids in biological materials. A review |
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Analyst,
Volume 86,
Issue 1029,
1961,
Page 768-813
W. C. Hutchison,
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768 HUTCHISON AND MUNRO: THE DETERMINATION OF NUCLEIC [Vol. 86 The Determination of Nucleic Acids in Biological Materials A Review" BY \V. C. HUTCHISON AND H. N. MUNRO (Departfizzed of Biochemistvy, The University, Glasgow, W.2) SUMMARY OF CONTENTS Scope 01 the review and general survey of methods The preparation of tissue samples for nucleic acid determinations l'recautions during removal of tissues Extraction of acid-soluble compounds Extraction of phospholipids 1. The procedure of Schmidt and Thannhauser il'Iethods of determining nucleic acids in the tissue residue The use of alkaline hydrolysis to separate RNA from D X h Conditions for alkaline hydrolysis of RNA Resistance of DNA to alkalinc hydrolysis Occurrence of iiisoluble residues at the end of alkaline digestion Methods used for separating KSA4 and DNA after alkalinc digestion The IWA fraction of thc alkaline digest Determination of the phosphorus content of the RN,4 fraction Sletei-mination of the pentose content of the KNA fraction 1 ktermination of the ultra-violet absorption of the RXA fraction Quantitative separation ol bases and nucleotides in the I< NA €ractiorr I3etermination by phosphorus content ISetermination by deoxypentose content 1 Ietermination by ultra-violet absorption Determination by quantitative measurement of individual bases Ikcommendations foi- the me of the Schmidt - Thannhauser method The efficienc-j- of extraction with TCA and PCA Determination of nucleic acids in the extract Recommendations for the usc of the Schneider procedure Comments on the use of the Ogur - Rosen procedure Extraction of nucleic acids with salt solutions Other procedures for extracting iiucleic acids Determination of nucleic acids by isolation of uracil and thymine Miscellaneous procedures connected with nucleic acid determination The DSX fraction of the alkaline digest 2.The Schneider procedure 3. The procedure of Qgur and Rosen 4, Other procedures General recommendations for nucleic acid determination WORK on the structure and function of ribonucleic acid (RNA) and deoxyribonucleic acid (DNA) continues unabated in intensity. Potter1 has recently compared the growth of interest in tlie field of nucleic acids with tlie phases of growth of a bacterial culture. After preparation of the medium and inoculation with the basic discoveries, we are now in a phase of logarithmic growth of knowledge about the nucleic acids. A necessary part of this exploration of the function of the nucleic acids is the accurate measurement of the amounts of both types of nucleic acid in biological materials of all kinds.Further, the measurement of DNA has come to possess a wider interest, in that it can be used as a measure of cell number in tissues, and in consequence data on other cell constituents such as protein can conveniently be expi-essed in relation to DNA as a standard of r e f e r e n ~ e , ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ a use foreshadowed by Berenblum, Chain and Heatley8 in 1939. The basic procedures currently in use for measuring the amounts of RNA and of DNA in biological materials-the methods of Schmidt and Thannhauserg and of SchneideP- :I: Reprints oC this paper will be available shortly.For details, please see p. 860.December, 19611 L\CIDS I N BIOLOGICAL MATERIALS. X REVIEW 769 were both enunciated in 1946, and tlicre have since been several reviews of the held. The then available information was suinimarised in 1964 by Volkin and Cohn,I1 in 1955 bj- Markham12 and in 1956 by Leslie,13 and partial surveys have been made by Schniidt14 in 1957 and by Webb and Levyz5 in 1958. Such is the rate of growth of knowledge in the nucleic acid field, however, that the time seems appropriate €or a re-appraisal of methods of cleter- mining nucleic acid. An attempt is made here to cover in as completc a fashion as possible all published results with a bearing on the determination of nucleic acids.As the title indicates, the methods reviewed here will be restricted to those applicable to the determination of nucleic acids in biological materials. Procedures used in purely chemical or other non-biological experiments will not be included ; thus viscosimetric measure- ment is not dealt with. Also excluded from the survey are methods designed for measuring incorporation of radioactive precursors into RNA and DNA without reference to quantitative recovery of these nucleic acids, In anaiysing the nucleic acid content of biological specimens, the initial step is to remove substances that would otherwise interfere with reactions used subsequently for determining the nucleic acids. This commonly involves washing the tissue briefly with acid in the cold, in order to remove acid-soluble small molecules ( e g ., free nucleotides), and this is usually succeeded by removal of the lipids and phospholipids with organic solvents. In some forms of nucleic acid determination, this sequence is reversed, the lipids being removed first. The end-product in either event is the acid-washed lipid-free tissue residue, on which the nucleic acids can now be determined. The chemical constitution of the nucleic acids provides three main features that can be exploited for determining the amounts of RNA and DNA in the tissue residue. The nucleo- tide units from which RNA and DNA are constructed each consist of a purine or a pyrimidine base, a sugar (ribose in RNA, deoxyribose in DNA) and phosphoric acid. Consequently, the nucleic acids can be determined (a) by utilising the strong ultra-violet absorption of the bases, which will, however, not distinguish RNA from DNA, (b) by means of specific reactions for ribose (RNA) and deoxyribose (DNA) and (c) by determination of phosphorus, again a procedure that fails to distinguish RNA from DNA.Thus, if ultra-violet absorption or phosphorus determination is chosen as the basis of the analysis, it is evident that the two nucleic acids must first be separated before their concentrations can be measured independently. Such preliminary separation is the objective in thc procedures of Schmidt and ThannhauseP and of Ogur and Rosen.16 In the Schmidt - Thannhauser method, the different sensitivities of RNA and DNA to alkaline hydrolysis are utilised to separate them, and in the original form of this method the separated nucleic acids were then measured by phosphorus deter- mination.The Ogur - Rosen procedure involves the extraction of RNA by prolonged exposure to colcl perchloric acid and subsequent extraction of the DNA with hot perchloric acid; the ultra-violet absorption of each extract is a measure of the amount of RNA or DY-4 present. By contrast, the relatively specific reactions for ribose and deoxyribose can be used for measuring the amounts of RXA and DNA in solutions containing both nucleic acids: this is the basis of the SchneiderlO procedure, in which the nucleic acids are extracted b>- hot acid, the specific sugar reactions being then applied to this extract. These three procedures, or modifications of them, are the main methods in current use for determining the RNA and DNA contents of biological materials; in this review each will be considered in turn.On occasion, other procedures have also been used, such as the quantitative isolation of uracil to represent the RNA in the sample and of thymine to represent its L3NA content, and these will be dealt with later. Before considering the three maiE procedures and the less well known forms of determination, however, we shall first of all discuss in the preparation of biological materials for nucleic acid analysis those steps common to most methods of determination. Finally, at the end of the review an attempt will be made to provide the newcomer to this field with some guiding principles on which to basc a choice of method appropriate to the material in which he wishes to measure the nucleic acid.THE PREPARATION OF TISSUE SAMPLES FOR XUCLEIC ACID DETERMINATIONS PRECAUTIONS DURIXG REMOVAL OF TISSUES- The ubiquitous presence in tissues of enzymes capable of degrading nucleic acids to small molecules makes it essential to protect the nucleic acids while the tissue is being excised770 HUTCHISON AND MUNRO THE DETEKMINATION OF NUCLEIC [Vol. 86 and prepared for analysis. This has led most workers to transfer their samples as rapidly as possible to cold conditions, and it has been generally assumed that this is adequate to prevent significant enzymic degradation, although insufficient attention has been paid to verifying that this is so. Many workers homogenise the chilled tissue in water or saline in an ice-j acketed homogeniser and subsequently add ice-cold trichloroacetic acid (TCA) to precipitate the protein and extract the acid-soluble constituents, but other investigators have homogenised directly in TCA in order to minimise enzymic degradation. In theory this is commendable, but it must be remembered that TCA can attack the metal parts of a homogeniser, and with the Potter - Elvehjem type of homogeniser difficulty may be encountered due to the formation of the slightly sticky protein precipitate that tends to clog the space between pestle and tube.Sometimes more strenuous precautions are taken to prevent enzymic degradation. Logan, Mannell and Rossiterl' plunged their samples of nervous tissue into liquid nitrogen and then ground the tissue to a fine powder.In a review of procedures for nucleic acid determination suited to plant tissues, Markham12 suggests that placing the tissue in boiling alcohol would be the most effective method of inactivating enzyme activity. KovaCsl8 suggests the use of strong urea solutions for rapid solution of tissue culture cells. May and Grenelllg studied factors affecting nucleic acid recoveries from different areas of rat brain. Removal and dissection of the brain took a maximum period of 15 minutes; unless the brain was dissected on a chilled block, nucleic acid recoveries were reduced by 20 to 37 per cent., according to the area of the brain analysed. In addition, these authors found that storage of brain tissue by deep-freezing led to a lower recovery of nucleic acids than was obtained from fresh tissues. This loss was confined to WNA and amounted to as much as 60 per cent.for the hypothalamus. On the other hand, Smith2* observed no change in the RNA content of specimens of liver frozen for as much as 4 days. He found, however, that the temperature of preparation and homogenisation of the tissue was critical, dry ice giving 20 per cent. higher recoveries than cracked ice. EXTRACTION OF ACID-SOLUBLE COMPOUNDS- Brief extraction of the tissue with cold acid is used (a) to remove inorganic phosphate and organic phosphorus compounds of low molecular weight, as they might otherwise appear in the phosphorus from the nucleic acid fraction, (b) to remove sugars and polysaccharides that would affect sugar reactions for RNA and DNA and (c) to eliminate nucleotide coenzymes whose purine and pyrimidine components would augment the recoveries of these bases in the nucleic acid fractions.In selecting conditions for the extraction of these interfering com- pounds, the investigator must balance two opposing hazards: on the one hand, his conditions may be inadequate to extract these compounds completely; on the other hand, too vigorous extraction may result in some degradation of the nucleic acids. The latter possibility can take two forms. Injudicious use of acid can result in extraction at this stage of RNA along with the compounds of low molecular weight. Secondly, DNA may be attacked by the acid, causing loss of purine bases, through change to apurinic acid.The apurinic acid remains in the acid-insoluble precipitate, but, unlike the parent DNA, being sensitive to hydrolysis by alkali under the conditions of the Schmidt - Thannhauser procedure, then appears in the RNA fraction. The extraction of acid-soluble compounds has usually followed the normal lines for obtaining the acid-soluble fraction of tissues. TCA is commonly used at a final concentration of 10 per cent., but as little as 5 per cent. may suffice. The tissues are homogenised in cold TCA and then subjected to at least one further wash with cold TCA, in order to achieve complete removal of acid-soluble material. It is important to maintain a low temperature during this extraction by making use of a refrigerated centrifuge, since not only does this rninimise acid hydrolysis of the nucleic acid in the tissue, but it also favours formation of a granular precipitate of protein, which is effectively washed with TCA and lipid solvents. If the temperature is allowed to rise, the precipitate tends to be more or less gummy and is difficult to handle.Studies of the completeness of the acid-extraction process have been almost exclusively confined to examination of phosphorus recoveries. McCarter and Stelj es21 subjected liver homogenates to four extractions with cold 10 per cent. TCA; their results show that the successive extractions accounted for 91, 4, 3 and 2 per cent. of the total acid-soluble phos- phorus obtained. In a similar study of the acid-soluble phosphorus compounds extractedDecember, 19613 ACIDS I N BIOLOGICAL MATERIALS.A REVIEW 771 from allantoic membranes by 5 per cent. TCA, Graham22 has shown that three successive extractions provided 92, 7 and 1 per cent. of the total acid-soluble phosphorus obtained, and on studying extraction of liver samples with 10 per cent. TCA observed that a fourth extraction removed only an additional 1 per cent. of phosphorus. The effect of repeated extraction of liver samples with 10 per cent. TCA has been more extensively investigated by Davidson, Frazer and H u t ~ h i s o n , ~ ~ who obtained a small additional extraction of phosphorus compounds by increasing the number of extractions from 3 to 20, but consideration of the specific activity of this additional phosphorus fraction after 32P injection led them to the conclusion that it was likely to have arisen from break-down of protein-bound phosphoric esters.This exhaustive procedure did not diminish recovery of phosphorus in either nucleic acid fraction subsequently isolated by the Schmidt - Thannhauser procedure. On the other hand, L ~ n d i n ~ ~ observed some diminution in recovery of both RNA and DNA when washing with cold 7 per cent. TCA was increased from five to twenty times, and Daoust and HooperZ8 believe that extractions with cold TCA should be limited to four, so as to minimise break- down of acid-insoluble compounds. From all these investigations it seems clear that there is nothing to be gained by increasing the number of extractions of animal tissues with TCA beyond the conventional three or four times. On the other hand, yeast and bacteria contain polyphosphates that, if not extracted, will appear in the RNA fraction by the Schmidt - Thannhauser procedure.Removal of these substances appears to present some difficulties. Katchman and Fetty2' extracted yeast with various concentrations of cold TCA for 1 hour and two subsequent 1-hour washes with 10 per cent. TCA. The concentration of TCA used in the initial extraction was varied between 5 and 40 per cent. without affecting the amount of orthophosphate recovered, but at the lower concentrations polyphosphate was inadequately extracted, whereas at the highest concentrations of TCA there was some break-down of nucleic acid. The authors finally selected 10 per cent. TCA as providing the best com- promise. Finally, it must be remembered that acid-soluble tissue components other than phosphorus are potential sources of interference when the methods of nucleic acid deter- mination do not depend on phosphorus measurements.Thus tissue glycogen can affect the determination of nucleic acids by sugar reactions. The experiments of Stetten, Katzen and Stetten2* on extraction of glycogen from liver and muscle with 5 per cent. TCA show that removal of this polysaccharide is not measurably improved by increasing the number of extractions above three; there remains a fraction of tissue glycogen that defies extraction with TCA and is only solubilised by alkali. Acid precipitants other than TCA have been used for removing compounds of low molecular weight. Cold perchloric acid (PCA) was introduced by two groups of investigators in 1950.Schneider, Hogeboom and Ross29 extracted tissues once with 12 per cent. (2 N) PCA and then twice with 6 per cent. (1 N) PCA, whereas Ogur and Rosen16 using plant tissues recommend two extractions with 1.2 per cent. (0-2 N) PCA. The latter authors state that no measurable amount of nucleic acid is lost by 3 hours' contact of the tissue with cold 0.2 N PCA, whereas essentially complete extraction of RNA from liver and plant tissues is obtained by exposure to 6 per cent. (1 N) PCA for 3 to 6 hours at 4" C. Hutchison, Downie and Munro30 observed an appreciable loss of RNA from liver samples left in contact with cold 4 per cent. (0.7 N) PCA for 2 hours, and from embryonic tissues Pau131 has recorded losses of RNA even with 1.2 per cent.(0.2 N) PCA used for a short period; with this tissue he has preferred to extract acid-soluble components with cold x sulphuric acid, to which RNA is stable. These observations indicate that there is an inherent danger of solubilising some of the RNA of the tissue if PCA4 is used as the extractant, notably when high concentrations are used. A few authors have compared the efficiency of PCA and of TCA for removal of acid- soluble phosphorus compounds. MoulP observed that four extractions with 5 per cent. (0.8 N) PCA at 4" C extracted the same amount of phosphorus from liver as did 10 per cent. TCA. Smillie and K r ~ t k o v , ~ ~ in an extensive study of methods of nucleic acid determination on EugZeiza gracilis, subjected the organism to two extractions with 15 per cent.TCA, 10 per cent. (1-6 N) PCA or 2 per cent. (0.3 N) PCA. The two concentrations of PCA were less effective than the TCA in extracting phosphorus compounds, but the use of 15 per cent. TCA resulted, on the other hand, in a small loss of RNA. This was eventually circumvented by carrying out a preliminary extraction with methanol or other lipid solvents, after which acid-soluble phosphorus compounds could be completely extracted with 5 per cent. TCA or 5 per cent. (0-8 N) PCA.772 HUTCHISON AND MUNRO THE DETERMINATION OF NUCLEIC [Vol. 86 The effect of allowing the temperature to rise during extraction with acid has been the subject of a studj' by Bonar and D ~ g g a n . ~ ~ Samples of thymus DNA were treated with 5 per cent. TCA, 1.2 per cent.(0-2 N) PCA or 0.2 N hydrochloric acid for 40 minutes at room temperature. About 5 per cent. of the DNA phosphorus was dissolved during this treatment, but a more serious consequence was the production of apurinic acid by loss of purine bases, so that a large part of the DXA became susceptible to alkaline degradation under the condi- tions of the Schmidt - Thannhauser procedure for separating RNA from DSA. Consideration of this problem will be deferred until the Schmidt - Thannhauser procedure is discussed. Finally, some a u t h ~ r s l ~ , ~ ~ ,34 335 have preferred to extract lipids before removing acid-soluble compounds. Although von Euler and Schmidt36 observed that preliminary treatment with ethanol could render difficult the subsequent extraction of phosphorus compounds of low molecular weight, owing to their binding to protein, later workers have not encountered this difficulty.The work of Smillie and K r ~ t k o v , ~ ~ cited above, indicates that preliminary treatment of the sample with methanol, acetone or ether permitted complete extraction of phosphorus compounds from Euglena with lower concentrations of acid than would otherwise have been needed. Graham22 observed that the order of using 5 per cent. TCA and lipid solvents did not affect the recovery of acid-soluble phosphorus from allantoic membrane, and Fries37 made a similar observation when studying the extraction of phosphorus compounds from leaves with cold 0.1 N hydrochloric acid. From a consideration of all the available evidence on extraction of acid-soluble compounds from tissues, it seems that the use of TCA has much to commend it, three or four extractions with 10 per cent.TCA being adequate in most circumstances. The substitution of PCA for TCA should not be made lightly, unless there are compelling reasons for the change, such as the necessity to carry out ultra-violet measurements on the cold acid extract, for which PCA is much the better medium. If PCA is chosen, the drawbacks observed by some users should be borne in mind and steps taken to avoid them. The temperature of extraction must be rigorously controlled, but it seems a matter of indifference whether the extraction with acid comes before or after that with lipid solvents. EXTRACTION OF PHOSPHOLIPIDS- In many of the earliest procedures for nucleic acid determinations in tissues, the amount of nucleic acid was finally calculated from the phosphorus determination.This necessitated preliminary removal of phospholipids from the acid-ex tracted tissue residue by means of lipid solvents. With methods of nucleic acid analysis not dependent on phosphorus deter- mination, it may not always be necessary to treat the tissue with lipid solvents. Thus SchneiderlO measured the nucleic acid content of tissues after treatment with cold acid and lipid solvents by extracting them with hot TCA and assaying the ribose and deoxyribose contents of the extract; he noted that omitting to use lipid solvents did not affect the values obtained for the Rh'A or DXA content of rat liver and rat brain. Similarly, Fleck and Munro38 used ultra-violet absorption and ribose determinations in conjunction with the alkaline-digestion procedure of Schmidt and Thannliauser to determine the RXA content of rat liver and observed no effect on these values when lipid solvents were not used before the alkaline hydrol!Tsis.There would thus seem to be good reason to omit the use of lipid solvents from nucleic acid analyses in which determination of phosphorus is not involved. Nevertheless, lipid solvents sometimes confer advantages other than removal of phospho- lipids. For plant tissues they often provide a convenient means of removing pigments. Moreover, TCA, which is strongly ultra-violet absorbing, is removed in the course of extraction with lipid solvents, and this may be advantageous if the nucleic acids are to be measured subsequently by their ultra-violet absorption.Removal of TCA at this stage is also a safe- guard against its interference with the Ceriotti reaction for DTc'A.3!' Finally, recent evidence40 shows the presence in yeast of nucleotide - amino acid complexes soluble in alcohol; whether failure to extract such compounds would contribute appreciable errors to measurement of nucleic acids in yeast or other biological material is not known. Lipid solvents in conside1 able variety have been used for removing phospholipids from tissues.41. I t is not always easy to discern the principles that have guided each investigator's choice. Tlie coinmonest method involves extracting the tissue residue after acid treatment with cold 95 per cent. ethanol and then boiling it in a (3 + 1) mixture of ethanol and ether.10~21~23~25~42 Some authors then extract with etheF,43$44 and occasionally with (1 + 1) methanol - ~ h l o r o f o r m ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ or methanol - ether.47 Schneider and K1ug48 concluded thatDecember, 19611 ACIDS I N BIOLOGICAL MATERIALS.A REVIEW 773 two extractions with ethanol were sufficient to remove the phosphorus-containing lipids, but this is in contradiction to the known solubilities of the various phospholipids. The only solvent common to the three main groups of phospholipids is chloroform. The lecithins are extractable with cold ethanol and with ether, and the cephalins with ether; the sphingo- myelins, on the other hand, are insoluble in cold ethanol and ether, but extractable with hot ethan01.~~9~O Consideration of these facts explains why McCarter and Stelje321 found that, after extracting rat liver twice with ethanol, a considerable amount of phosphorus could still be extracted by one treatment with hot ethanol - ether, though little more phos- phorus was obtained by further extraction with this solvent.Smillie and K r ~ t k o v ~ ~ used boiling ethanol as their initial lipid extractant for Euglena cells, and this may account for their observation that subsequent extractions with hot ethanol - ether and with hot ether did not add significantly to the amount of phosphorus extracted. Daoust and Hooper26 observed that ethanol and ethanol - ether extracted almost all the phospholipid material from liver, but that further traces were removed by subsequent extraction with methanol - chloroform and ether.It may be concluded from the available evidence that two extractions with ethanol (removing TCA and lecithins) and one with hot ethanol - ether (removing cephalins and syhingomyelins) will prove adequate in most circumstances. However, it is often inconvenient to use hot solvents, and introduction of an extraction with cold chloroform will avoid this necessity. Since the specific gravity of chloroform is such that subsequent spinning in a centrifuge of the tissue residue is difficult, it is usual to employ a mixture of chloroform and ethanol, commonly in the proportions of 1 to 3.8 A final wash with ether may be included if a residual dry powder is wanted. This dry powder is usually prepared by allowing the ether to evaporate at room temperature, but it is desirable to stir the material frequently to prevent formation of lumps, finely divided residue being more readily handled in subsequent treatment with acid or alkali.The standard method of lipid extraction used by us consists in treating the acid-extracted tissue with ethanol, ethanol - chloroform (3 + 1) twice, ethanol - ether (3 + 1) and ether. Some authors have begun the lipid extraction with acetone.24 This removes TCA, water and pigments, but the phospholipids in general are not soluble in acetone. Holloway and Ripley51 found that the use of acetone overcame their difficulty in determining the nucleic acids of reticulocytes, whereas the use of ethanol immediately after TCA extraction caused formation of a gel.A few authors have described adverse effects of lipid-solvent treatment on the recoveries of nucleic acids. Venkataraman and LoweS2 and Venkataraman53 have made the rather startling claim that about 30 per cent. of rat liver RNA is lost when the acid-wet tissue after extraction with cold 5 per cent. TCA is put in contact with cold 95 per cent. ethanol. Hut- chison, Downie and Munro30 have been unable to substantiate these observations. It may be noted that Schneider,lo in the original description of his procedure for nucleic acid deter- mination, prescribes initial extraction of the tissue with cold 10 per cent. TCA and then treatment with approximately 80 per cent. ethanol and afterwards other lipid solvents, but comments that omission of the lipid-solvent treatment does not influence the amount of RNA subsequently extracted from the tissue.This observation has been confirmed by Greenbaum and Slater54 on mammary gland tissue, and Cooper and L ~ r i n g , ~ ~ with tobacco- leaf chloroplasts, have also observed that omission of preliminary treatment with TCA and lipid solvents (ethanol, ethanol - ether and ether) does not influence the recovery of RNA. These various observations lead to the conclusion that loss of RNA in cold acid-wet lipid solvents does not normally occur. A different type of hazard arising from the use of lipid solvents has been described by Mark0 and Butler.56 They observed that, after extraction of the tissue with cold TCA, two washes with cold ethanol were insufficient to remove all the acid and that enough remained to cause degradation of DNA to apurinic acid when the tissue was then heated in ethanol - ether.They were able to prevent this by saturating the first ethanol wash with sodium acetate, thus reducing the acidity. Lundin25 has confirmed from analyses made on rat liver that degradation of DNA can occur if the degree of acidity is not controlled during lipid extraction and that Mark0 and Butler's modification effectively eliminates this action. The use of sodium acetate at this stage would seem a simple precaution to take in all forms of lipid-extraction procedure in which one of the solvents is heatcd or even kcpt for any length of time a t room temperature. We ourselves30 have encountered a variant of this difficulty774 HUTCHISON AND MUNRO THE DETERMINATION OF NUCLEIC [Vol.86 when samples of rat liver were extracted with cold PCA and then with lipid solvents and finally stored as dry powder at room temperature while awaiting analysis. During storage there was a gradual fall in DNA content, as measured by the Schmidt - Thannhauser method, and examination showed that the powders were still distinctly acid in reaction. METHODS OF DETERMIKING NUCLEIC ACIDS IN THE TISSUE RESIDUE 1. THE PROCEDURE OF SCHMIDT AND THANNHAUSER Various procedures are available for determining nucleic acids left in the tissue residue after treatment with cold acid and lipid solvents. Schmidt and ThannhauserJsg method for this is outlined in the flow diagram (see Fig. l), which shows that, after extraction of the tissue with acid and lipid solvents, the residue is incubated with alkali.This degrades RNA to acid-soluble fragments, leaving the DNA in an acid-insoluble form. Addition of acid at the end of digestion thus results in an acid-soluble fraction containing the RNA degradation products and a precipitate containing the DNA. In the procedure originally described, the tissue residue is digested in N potassium hydroxide at 37" C for a t least 15 hours, but many variations in the conditions for alkaline hydrolysis have been used, and their merits require evaluation. In the original method, moreover, phosphorus determination is used to measure the amounts of nucleic acid present in each fraction of the acidified digest. Measurement of the pentose and purine contents of the RNA fraction led Schmidt and Thannhauser to conclude that the results obtained by phosphorus determination gave a reliable measure of the RNA present.Nevertheless, a considerable body of evidence has since accumulated to show that, at least for the RNA fraction, phosphorus determination may involve considerable error from the presence of contaminating compounds. In consequence, other procedures for determining RNA and DNA in the isolated fractions of the alkaline digest have been proposed and require critical considerat ion. Each of the features of the Schmidt - Thannhauser procedure-alkaline digestion, deter- mination of RNA in the acid-soluble fraction and determination of DNA in the precipitate -will now be considered in more detail. THE USE OF ALKALINE HYDROLYSIS TO SEPARATE RNA FROM DNA- I t has been known for more than half a century that RNA undergoes degradation on exposure to alkali.In 1922, the foundations of the modern analytical use of alkaline hydrolysis were laid by Steudel and P e i ~ e r , ~ ~ who demonstrated that yeast RNA is hydrolysed by sodium hydroxide acting at 15" to 17" C over a period of 24 hours, whereas thymus DNA is not attacked under these conditions. As shown in Fig. 2, the ease of hydrolysis of RNA (I) by alkali is due to the proximity of the hydroxyl group on the C, of ribose to the phosphoric acid of the 3',5'-phosphodiester linkage, which permits formation under alkaline conditions Tissue Cold acid extraction Acid-soluble fraction Lipid Alkaline digestion followed by acidification Acid-soluble fraction containing RNA Precipitate containing DNA Fig.1. The Schmidt - Thannhauser procedure for separation of RNA and DNA in tissues. (Reproduced from Davidson, J. N., "The Biochemistry of the Nucleic Acids," Fourth Edition, Methuen & Co., Ltd., London)December, 19611 ACIDS I N BIOLOGICAL MATERIALS. A REVIEW 775 of a cyclic phosphotriester (11) involving the C, and C , atoms of the ribose. The triester then undergoes hydrolysis at the C, linkage, leading to rupture of the RNA nucleotide chain (111) and as final products the 2’- and 3’-mononucleotides (IV and V). The absence of a hydroxyl group on the C, atom of deoxyribose precludes the formation of a cyclic triester from DNA and thus accounts for the resistance of DNA to alkaline hydrolysis.This explanation of the differing actions of alkali on RNA and on DNA was first offered by Fonb5* and has been amply support,ed by Brown and Todd.59 Jordan6* provides a useful recent summary of the chemical evidence about this series of reactions, / O= P-OH Alkali a -1.. - 0 0 OH 0 H O C G ; H col H 0 0 H \/ O=P I OH II Ill HocQH H - 0 0 \ / O=P-OH PO,H, V Fig. 2. Hydrolysis of RNA by alkali; R represents a purine or pyrimidine base. (Repro- duced from Davidson, J . N., “The Biochemistry of the Nucleic Acids,” Fourth Edition, Methuen & Co. Ltd., London) The difference between the alkali labilities of RNA and DNA forms the basis of the Schmidt - Thannhauser procedure for determining the nucleic acids; in it the tissue residue, after treatment with cold acid and lipid solvents, is dissolved and incubated in alkali.The DNA is subsequently precipitated by acidification of the digest, whereas the RNA is not, because it has been hydrolysed by the alkali to simpler substances no longer precipitable by acid. I t has been generally assumed that the products of RNA hydrolysis are entirely mononucleotides, but recent evidence shows that break-down is often less complete, a fact that can affect some of the procedures used in determining the amount of RNA obtained. This makes it necessary to consider in some detail the action of alkali on RNA. Conditiouts for alkaline hydrolysis of RNA -Various alkalis have been used for hydrolysing RNA. The earliest studies on nucleic acid structure were carried out with ammonia, usually at high temperatures produced by autoclaving the ~ a m p l e .6 ~ ~ 6 ~ ~ 6 ~ ~ 6 ~ A few authors have also used sodium carbonate,g5 ya6 barium carbonate6’ or the hydroxides of lead, cadmium, zinc, bismuth or aluminium,68 the latter series of compounds acting by a mechanism not dependent on alkaline conditions. For analytical purposes, however, only sodium and potassium hydroxides have been employed as hydrolysing agents. In their degradative action on RNA, sodium and potassium hydroxides do not appear to differ in effectiveness, but potassium hydroxide possesses the advantage that most of the K+ can be conveniently removed as the sparingly soluble potassium perchlorate by acidifying with perchloric acid at the end of alkaline digestion.$76 HUTCHISON AND MUNRO: THE DETERMINATION OF NUCLEIC [Vol.86 In their original description of the use of alkali for the quantitative separation of RNA from DNA, Schmidt and Thannhauserg prescribe the use of N potassium hydroxide a t 37" C for at least 15 hours to render all the RNA non-precipitable with acid. The RNA content of the specimen is indicated by the amount of phosphorus not precipitated on acidification of the digest. Table I shows that many subsequent users of the Schmidt - Thannhauser principle have altered the conditions of alkaline hydrolysis; the strength of alkali has been reduced to as little as 0-05 N and the duration of digestion to as short a period as 30 minutes, and the temperature of incubation has been varied within a range extending from 5" to 100" C.Further, it has been found that the acid-soluble portion of the digest from many tissues contains considerable amounts of phosphorus from sources other than RNA; consequently alternative methods of measuring its RNA content have been employed. For some of these alternative procedures (e.g., ribose determinations), it is only necessary to ensure that the RNA has all been rendered non-precipitable on acidifying the digest, but other procedures (e.g., isolation of the individual ribomononucleotides) depend on complete hydrolysis of the RK;,4. Consequently, it is necessary to consider (a) the minimum conditions under which RNA is completely converted to substances non-precipitable with acid, (b) the conditions required to reduce it to mononucleotides and (c) any undesirable consequences that may result from use of higher concentrations of alkali or more vigorous conditions to ensure complete hydrolysis.TABLE I SOME VARIATIONS IN THE CONDITIONS USED FOR ALKALINE HYDROLYSIS OF TISSUE RESIDUES BEFORE SEPARATING RNA AND I>NA IN THE COURSE OF THEIR DETERMINATION Normali-ty of alkali 1.5 1.0 0.5 0.4 0.3 0.25 0.1 0.05 Temperature, "C 37 37 35 38 30 Room Room ." 38 37 100 37 30 37 37 80 35 Duration of incubation, hours 48 15+ 4 2 18 18-24 1 18 18 24 1 1 18 24 18 0.5 4 Tissue examined Liver Mammalian tissues Mammary tumour Haemopoietic tissue Arbacia eggs Bacteria; plant tissues Liver ; kidncy; spleen; epidermis : yeast ; plant root Liver nuclei Liver Mammalian tissues Tissue culture ceIls Liver Fungi Liver Sa!ivary gland: tumour cells Cell nuclei Bacteria Author and reference Daoust and Hooper26 Schmidt and ThannhauserQ DrashereO Lowrance and Carter70 Marshak and Marshak7f Iverson and G i e ~ e ~ ~ ; Cooper and Loring65 Scott, Fraccastoro and TafPJ3; Bonar and Duggan33; Gries- emer74; Fleck and MunroSe; Heyes75 Olmsted and Villee'6 A n n a ~ ~ ~ Montreuil and Boulanger78 McIntire and Sprou117Q Fleck and Munro38 Minagawa, Wagner andaStraussaO Kosterlitz43 Rabinovitch, Rothscliild and Junqueirasl; Pileri and Le- douxs2 NasliBa Bernlohr and MTebster84 The minimum concentration of alkali that will initiate degradation of RNA was investi- gated by Zittle,85?86 who incubated samples of purified RNA with different concentrations of sodium hydroxide at 20" to 25" C for several days and observed the changes in the pre- cipitability of RNA by a solution of uranyl chloride in TCA and also the liberatian of acid groups from hydrolvsis of the RNA.There was no evidence of degradation in samples held at pH 10.6 (equivalent to a final concentration of 0.0005 N alkali), but at pH levels above 11.8 (0-00s N alkali) reduction in precipitability and liberation of acid indicated that hydrolysis was taking place. Incubation at higher temperatures reduced the critical pH at which hydrolj& occurred. The stability of RKA in dilute alkali (pH 10.5 at room temperature) was confirmed by Brown, Fried and Todd.N7 This resistance to weak alkali has been used in the tecllnique for removal of amino acids from soluble RNA.88 After exposure of this RNADecember, 19611 ACIDS I N BIOLOGICAL MATERIALS.A REVIEW 777 to pH 10 for a period of 1 hour at 37" C, the soluble RNA still retains its biological activity of accepting labelled amino acids.89 Although Zittle's results show that degradation occurs when RNA is exposed for a long enough time to concentrations of alkali above 0.006 N, it must be remembered that acidic groups are released as digestion proceeds, so that during incubation the pH may fall below the critical level for hydrolysis. Moreover, tissue. samples contain proteins as well as nucleic acids, and the former will to some extent reduce the initial pH of the digest by buffering some of the alkali. For these reasons, it is necessary to use a considerably higher concentration of alkali than 0.006 N sodium hydroxide to ensure that the initial pH will be adequate in presence of tissue proteins and that hydrolysis will continue throughout incubation.The effective. concentration will depend on the amount of tissue suspended in a given volume of alkali; a common proportion is 1 ml of alkali to each 100 mg of original tissue.9 Several authors have examined the products formed from RNA at different times during the course of alkaline digestion. Although Jones and PerkinsQo found that yeast RNA had to be exposed to 1 per cent. (0.25 N) sodium hydroxide at room temperature for 3 to 4 hours before it ceased to give a precipitate with acid, subsequent studies show that this estimate is unduly pessimistic. Within 15 minutes of incubation in 0-3 N alkali (pH 13.5), purified yeast RNA is rendered almost completely dia1ysableg1 and purified rat-liver RNA can no longer be precipitated with acid.38 Lane and Butlerg2yg3 hydrolysed a purified sample of yeast RNA in 0.86 N potassium hydroxide for 2 hours at 26" C and recovered 48 per cent.as mononucleo- tides, 31 per cent. as dinucleotides and 21 per cent. as higher oligonucleotides; nothing in the hydrolysate was precipitable with acid. With digests of lipid-extracted tissue residues, it has been shown that exposure for 1 hour to N alkali at room t e r n p e r a t ~ r e ~ ~ , ~ ~ , ~ ~ or 0-3 N alkali at 37" C38 is enough to extract all the RNA and destroy its precipitability by acid. It can be concluded that, if the objective is merely to separate the tissue RNA from DNA, then 1 hour of incubation under these conditions will suffice, a t least for the tissues examined (liver, kidney, spleen, epidermis, yeast).Although these studies indicate that the initial degradation of RNA by alkali proceeds rapidly, complete resolution to mononucleotides is more difficult to achieve, especially when the material submitted to digestion consists of tissue residues. Chargaff and his colleagues subjected purified yeast RNA and liver RNA94 and the lipid-free tissue residue from sea-urchin eggsQ5 to digestion at pH 13 to 14 (0.1 to 1 N alkali) for 12 hours a t 30" C ; they claim to haw obtained in the RNA fraction of the digest essentially complete recovery of the ultra-violet absorbing material in the form of mononucleotides. Although Marrian, Spicer, Balis and Browns6 also observed a high recovery of ribomononucleotides (86 to 99 per cent.) after digestion of purified yeast RNA in 0.3 N potassium hydroxide for 18 hours at 37" C, a much less satisfactory recovery was obtained when the material digested consisted of fat-free tissue residues.This is in agreement with the low recoveries of adenylic acid from de-fatted yeast specimens observed under similar conditions of alkaline digestion by Kerr, Seraidarian and Brown.97 An examination of the recovery of mononucleotides by column chromatography after digestion of the lipid-free residue from rat liver at 37" C in different concentrations of alkali has been reported by Lamirande, Allard and Cantero.g8 After incubation in 0-3 x potassium hydroxide for a period of 24 hours, only 70 per cent.of the initial ultra-violet absorbing material of the original hydrolysate was recovered as mononucleotides. After incubation in N alkali for 42 hours the yield was 90 per cent.; with 1.5 N potassium hydroxide the recovery rose to 98 per cent. In calculating recoveries, these authors do not indicate how they corrected for ultra-violet absorption due to protein and to DNA in the material obtained at the end of alkaline digestion. Although these earlier studies on mononucleotide recoveries from alkaline digests reveal a somewhat contradictory picture, the occurrence of a fraction in RNA resistant to alkaline hydrolysis is now well authenticated. Several authorsg2 993 yg9 ~100~101~102,103 report the presence of material other than monoiiucleotides in hydrolysates obtained from purified samples of RNA subjected to digestion in N alkali at room temperature or at 37" C for periods of 18 to 24 hours. This alkali-resistant oligonucleotide material does not usually exceed 3 to 5 per cent.of the total nucleotides present; a claim by Potter and DouncelOl that this fraction can attain 38 per cent. of the RNA in pancreas has not been confirmed.g3 More recently, Finamore and Volkinl03 have observed 10 and 20 per cent. of alkali-resistant oligonucleotide material in two species of RNA separated from amphibian eggs. The extensive researches of Lane and Butlerg3 show that the oligonucleotide fraction of RNA is composed chiefly of778 HUTCHISON AND MUNRO: THE DETERMINATION OF NUCLEIC purine dinucleotides, notably diadenylic acid, which is only slowly hydrolysed by alkali.Samples of RNA prepared from different sources were found to vary in their yield of dinucleo- tides, a specially high yield being obtained from digests of a synthetic polymer of adenylic acid.92 Most of this dinucleotide material is eventually hydrolysed to its mononucleotide constituents when the action of alkali is sufficiently prolonged, but the group also includes a number of dinucleotides permanently resistant to alkaline degradati~n.~~ This is apparently due to the presence of a sugar other than D-ribose, which prevents the formation of the cyclic triester essential to alkaline degradation of RNA and has been tentatively identified as 2'- or 3'-O-methylribo~e.~~~ From the available evidence, it can be concluded that determination of RNA in biological specimens by summation of its constituent mononucleotides may encounter the technical difficulty of incomplete hydrolysis. This can occur because (a) the effective alkalinity is reduced owing to the presence of protein in tissue residues submitted to digestion and (b) because significant amounts of alkali-resistant linkages are present in the RNA. From the results of Lane and Butler,gs quoted above, it is apparent that the proportion of these linkages can vary from one species of RNA to another.Most of these oligonucleotides eventually undergo hydrolysis to mononucleotides,93 and it would be logical to prescribe more vigorous alkaline conditions in order to achieve complete hydrolysis of the RNA. We must therefore consider whether an increase in the concentration of alkali or in the temperature of incubation, or both, and in the duration of incubation will lead to any undesirable effects.One factor setting an upper limit to the conditions of alkaline digestion is the level at which DNA begins to degrade to acid-soluble products; evidence about this will be considered later. A second factor affecting some assay procedures is the deamination of cytidylic acid to uridylic acid by alkali. Early investigators in the field of nucleic acid chemistry were well aware of this possibility66 ,Io5; the reaction occurs with greater facility than deamination of free cytosine by alkali.lo6 Marrian, Spicer, Balk and Browng6 and Davidson and Smelliel07 observed significant deamination (10 to 30 per cent.) when pure solutions of cytidylic acid were incubated at 37" C in N alkali for 12 to 18 hours, but none after incubation in 0-3 N alkali at 37" C or in N alkali at room temperature.This last observation was confirmed by Loring, Bortner, Levy and HammellloS and by Hall and Allen.lo9 Kleinschmidt and Manthey35 observed 2.4 per cent. deamination after exposing cytidylic acid to 0.3 N potassium hydroxide for 18 hours at 37" C. Fleck and M ~ n r o ~ ~ also observed deamination of cytidylic acid during digestion of purified rat liver RNA for 24 hours in N potassium hydroxide, but not in 0.3 N potassium hydroxide. On the other hand, Lamirande, Allard and Canterog8 did not observe reduced recoveries of cytidylic acid when tissue residues were digested in concentrations of alkali as high as 1.5 N for 42 hours at 37" C, and Mandel, Weill and LedigllO also failed to note any difference in cytidylic acid recovery from alkaline digests of tissue residues over a 15-hour period a t 37" C with either N or 0.33 N sodium hydroxide.The differing observa- tions made with pure nucleotide solutions or purified RNA on the one hand and with digests of tissue residues on the other may represent a difference in effective concentration of alkali; the tissue residue will reduce the pH of the alkali used through the buffering action of its protein content and also by release of acidic groups during digestion. The final factor that may deter the investigator from increasing the concentration of alkali or temperature of incubation is the concomitant release of protein in acid-soluble form from the tissue residue.This has long been recognised as an accompaniment of alkaline digestion. Fleck and M ~ n r o ~ ~ have demonstrated that the amount of protein solubilised by alkaline digestion increases progressively with the period of incubation and to a smaller extent when the concentration of alkali is raised from 0.3 to 1 N at 37" C. Since these authors observed that RNA is fully extracted from liver in a form not precipitable with acid after exposure to 0.3 N potassium hydroxide for 1 hour, further prolongation of incubation merely releases more protein without improving RNA recoveries. The additional protein has the disadvantage of absorbing ultra-violet light and provides in consequence a source of error in measuring ribonucleotides by their ultra-violet absorption.On the other hand, a period of 1 hour in alkali is insufficient to convert the RNA to mononucleotides; if this is also desired, a two-stage digestion of the tissue residue can be employed. Thus Olmsted and Villee76 extracted the tissue with N potassium hydroxide overnight at 5" C, precipitated the protein and DNA by acidification and subsequently continued digestion of the acid-soluble fraction in N alkali at room temperature. A modification of this procedure could be considered for [I7 1. 8December, 19611 ACIDS IN BIOLOGICAL MATERIALS. ,4 IiEVIEW 779 reducing to negligible proportions the extraction of protein by alkali and yet retaining its digestive action to the mononucleotides. From a consideration of all the available evidence about the action of alkali on RNA, certain conclusions seem reasonably well founded.(a) The minimum concentration of alkali needed for the extraction and degradation of RNA in tissues cannot be accurately assessed, on account of the buffering action of the tissue proteins. In practice, incubation in 0.3 N alkali at 37" C has proved adequate, and there seems to be no advantage in using lower concentrations. ( b ) With 0-3 N alkali at 37" C or N alkali at room temperature all the RNA in a tissue can be extracted in 1 hour in a form no longer precipitable by acid. Although this does not degrade the RNA quantitatively to mononucleotides, the rendering of RNA non-precipitable with acid suffices for many analytical purposes.(c) Considerably more prolonged incubation in alkali is needed to reduce the RNA completely to mononucleotides, which is necessary if the RNA is to be estimated as mononucleotides. (d) Extraction of protein and possibly also deamination of cytidylic acid (both of which influence the ultra-violet measurement of RNA) can be unwelcome accompani- ments of more prolonged incubation. However, complete degradation to mononucleo- tides can, when desired, still be attained without the need to extract much protein if a two-stage alkaline digestion is used. (e) The efficiency of many of the variations in alkaline digestion shown in Table I has not been critically investigated. A period of 1 hour in 0.3 N alkali at 37" C or N alkali at room temperature is recommended as suitable.Resistance of DNA to alkaline hydrolysis-The success of the original Schmidt - Thann- hauserg procedure for separating RNA from DNA depends on the resistance of DNA to N alkali during 15 hours of incubation at 37" C. Since the original conditions of Schmidt and Thannhauser have frequently been modified, it is desirable to know the limits of resistance of DNA to alkali. Several studies indicate the conditions under which alkali can attack DNA at temperatures greater than 37" C. Bredereck and Mullerlll claimed to have degraded DNA to acid-soluble oligonucleotides by incubation in 0.1 N sodium hydroxide at 60" C, but Hurstll2 points out that their procedure for preparing DNA would itself reduce the DNA to oligonucleotides, Nashs3 found that thymus DNA resisted treatment with 0.05 N sodium hydroxide at 80" C for 30 minutes. A number of studies on the degradation of calf thymus DNA by incubation in sodium hydroxide at 100" C shows that the concentration of alkali is critical. Heating for 1 to 2 hours in concentrations of sodium hydroxide up to 0.6 N did not cause the release of more than 8 per cent.of the DNA phosphorus in acid- soluble form,112J13,114 whereas incubation in N sodium hydroxide at 100" C resulted in the production of acid-soluble products accounting for 30114 to 75 per cent.l12 of the DNA preparation after 1 hour and complete solubilisation after 4 to 8 hours at this temperature. Since the Schmidt - Thannhauser procedure in its original form prescribes incubation in N alkali at 37" C, it would be desirable to know the critical temperature between 37" and 100" C a t which N alkali begins to degrade DNA extensively to acid-soluble products.Sugiyama, Shinke and I ~ h i d a ~ ~ incubated specimens of DNA in N potassium hydroxide for 5 hours at 50" C and observed that about 5 per cent. was then acid-soluble; a similar amount was released by incubation at 37" C for 15 hours. This suggests that degradation in N alkali is accelerated a t some temperature above 50" C. The stability of DNA to incubation in N alkali at 37" C has occasionally been chal- lenged. The available evidence shows that DNA undergoes some depolymerisation above pH 1 1115 *116 v117 to yield non-dialysable products of polynucleotide dimensions.ll* However, such depolymerisation does not necessarily result in less facile precipitation with acid ; indeed, some reduction in molecular size has been claimed to make DNA more susceptible to acid precipitation.l19 Investigators who have looked for acid-soluble products after incubation of DNA in N alkali at 37" C for 15 to 18 hours have usually found no significant evidence of break-down.McCarter and Steljes,21 Sugiyama, Shinke and I ~ h i d a ~ ~ and Dutta120 submitted samples of DNA to 15 to 17 hours' incubation in N alkali at 35" to 37" C and recoveredsome 95 to 98 per cent. by acid precipitation, and Wyatt121 found no change in base ratios of two samples of DNA subjected to N sodium hydroxide for 18 hours at 37" C. In their original780 HUTCHISON AND MUNRO: THE DETERMINATION OF NUCLEIC [Vol. 86 publication, Schmidt and Thannhausers described an experiment in which purified RNA and DNA were added to minced rat liver and were recovered quantitatively as additional phosphorus in the appropriate fractions after acidification of the alkaline digest.In a similar experiment involving addition of RNA and DNA to allantoic membranes, Grahamz2 recovered 93 per cent. of the added phosphorus in the RNA fraction of the digest and 94 per cent. in the DNA fraction. Other authors have examined the acid-soluble portion of the alkaline digests of tissues for the presence of thymine derived from DSA and have recorded its absence after 18 hours of digestion in N potassium hydroxide at 30" C717122 or 37" C123 or in 0.3 N potassium hydroxide at 30" C,sO although Paigen and Kaufmann124 observed appreciable amounts after 18 hours of digestion in N potassium hydroxide at 36" C.It may be observed that the last-named authors used heat to extract with lipid solvents after acid extraction, and this may well have degraded the DNA to apurinic acid. Tests for deoxyribose in the acid-soluble fraction of digests of liver have either been negati~e3093~ ,125 or have yielded only trace^.^^?^^ 9126 Finally, Elson, Gustafson and Chargaffg5 used chromato- graphic procedures to separate the ribonucleotides in the acid-soluble fraction obtained after alkaline digestion of tissues and concluded that contamination of the ribonucleotides by break- down products from DNA could be excluded. A few authors have claimed that DNA may not always be completely precipitated by acid after digestion in alkali under the conditions of the Schmidt - Thannhauser procedure. Most of these claims are debatable.In a widely quoted paper, Drasher69 has castigated the Schmidt - Thannhauser method on the grounds that in some tissues the DNA may be degraded by alkaline digestion to a stage at which part is no longer acid-precipitable and so escapes estimation. This opinion is based on her measurements of DNA in mouse mammary tumour tissue, which gave considerably higher readings for deoxypentose when the tissue was extracted directly with hot TCA (SchneiderlO procedure) than on hot TCA extracts of the DNA fraction obtained by the Schmidt - Thannhauser procedure. It was therefore concluded that the Schmidt - Thannhauser value must be in error owing to loss of DNA into the acid-soluble RNA fraction, although no determinations of deoxypentose were made on this latter fraction.Drasher's direct measurement of the total phosphorus content of the Schneider extract falls considerably short of the amount computed by her to be present on the basis of the pentose and deoxypentose found in this extract. It thus seems a little ingenuous to claim that the deoxypentose values obtained on the Schneider extract are necessarily the correct ones merely on the grounds that they exceed the values obtained by the Schmidt - Thannhauser method. Nevertheless, the divergences reported by this author are of such a magnitude that anyone proposing to investigate the nucleic acid content of mammary tumours would be well advised to carry out careful checks on the adequacy of alkaline digestion for separating DNA from RNA.Other groups of workers have reported the release of DNA break-down products into the Schmidt - Thannhauser RNA fraction obtained from cell nuclei. Thus Mauritzen, Roy and Stedman,127 using isolated thymus nuclei, observed a positive Feulgen reaction and some thymine in the acid-soluble portion of the alkaline digest. However, their isolated nuclei were subjected to drying at room temperature for 2 days before being placed, without further chemical treatment, into N potassium hydroxide. It seems likely that break-down of DNA may have occurred enzymically during the drying period, with consequent appearance of the break-down products in the acid-soluble portion of the digest.More substantial evidence that calf thymus DNA may sometimes be degraded during alkaline digestion is provided by McIndoe and Davidson,lZ8 who subjected the Schmidt - Thannhauser RNA fraction obtained from thymus nuclei to ionophoretic separation and observed an ultra-violet absorbing area containing deoxyribose and of considerable magnitude. Since purified calf thymus DNA is stable to N alkali at 35" C for at least 17 hours,21 it is possible that the observed break- down of DNA in the thymus nuclei could have been due to enzymic action during the period between reinoval of the thymus at the abattoir and chemical treatment of the specimen. It is significant that DNA break-down was much less evident in studies made in the same laboratory on rabbit thymus,129 when the tissue would have been processed immediately after removal.Two remaining claims to have observed degradation products of DNA in the RNA fraction after acidification of the Schmidt - Thannhauser alkaline digest can be regarded as insufficiently substantiated. In an analysis of the nucleic acid content of influenza virus, Graham130 observed in addition to RNA a small amount of deoxypentose-reacting material,December, 19611 ACIDS I N BIOLOGICAL MATERIALS. A REVIEW 781 most of it present in the RNA fraction after alkaline digestion; more extensive tests46 have failed to confirm the presence of significant amounts of DNA in this virus. Finally, Tsanev and M a r k ~ v ~ ~ have suggested in a recent paper that a part of the DNA phosphorus can be split off during alkaline digestion and appear in the RNA fraction, even though deoxypentose and the bases remain in the fraction precipitated by acid.This conclusion is based on the lack of concordance of the authors' values for ultra-violet absorption, diphenylamine reaction and phosphorus content of the DNA fraction of the digest; as discussed later, this may have been due to inaccuracies in some of the methods used by them. The question of DNA lability to alkali must be viewed in relation to the conditions causing formation of apurinic acid from DNA. When samples of DNA are incubated at 37" C in solutions at pH 1-6, the purine bases become completely released within 24 hours,l31 giving rise to apurinic acid. When this apurinic acid is subsequently treated with alkali, the hydroxyl groups exposed as the result of the loss of purine bases permit the formation of cyclic triesters under alkaline conditions, just as in RNA, and this is followed by break-down of tracts of the DNA chain to yield acid-soluble products.For example, exposure of apurinic acid to alkaline solutions as weak as pH 12-8 (046 N) for 24 hours at 37" C results in the release of 30 per cent. of its phosphorus in dialysable f01-m.l~~ Formation of apurinic acid can occur during the initial washing with cold acid to remove small molecules or during extraction with lipid solvents still contaminated with acid, if the temperature rises during these procedures. Bonar and DuggaP have studied the effect of raising the temperature, during the initial washing with acid to remove small molecules, on subsequent resistance of DNA to digestion by alkali.They exposed samples of DNA to 5 per cent. TCA, 0.2 N PCA or 0.2 N hydrochloric acid for 40 minutes, at room temperature, and subsequently treated the samples with N alkali for 1 hour at room temperature. Some 30 to 40 per cent. of the DNA became acid-soluble after alkaline digestion ; when the preliminary treatment with 0.2 N PCA was carried out at 2" to 4" C, only 2 per cent. of the DNA was found in the acid- soluble fraction of the alkaline digest. Dutta120 has also noted the influence of the initial treatment of a specimen of DNA on its resistance to subsequent hydrolysis by N alkali at 37" C over a period of 16 hours. Without any previous treatment, his specimens of purified liver DNA released about 5 per cent.of their phosphorus in acid-soluble form after treatment with alkali. Preliminary brief treatment of the DNA with 5 per cent. PCA in the cold resulted in 9 per cent. being solubilised during alkaline digestion. On the other hand, preliminary heating of the DNA to 100°C for 5 minutes made 25 per cent. of the DNA phosphor1 is susceptible to alkaline degradation. Evidence that apurinic acid can arise from DNA by heating specimens in lipid solvents still containing acid carried over from the initial acid washings has already been considered above, in the section on lipid extraction of tissues. From the assembled data on DNA stability to alkali, it seems reasonable to conclude (a) that pure DNA is stable to N alkali at 37" C, and probably at temperatures considerably higher, although not as high as 100" C, (b) that many authors have successfully used the Schmidt - Thannhauser procedure on tissue samples without encountering evidence of DNA breakdown and (c) that conditions introduced accidentally may lead to formation of apurinic acid and consequent susceptibility to alkaline degradation.Anyone setting out to use the Schmidt - Thannhauser procedure for the first time, or to use it on a new tissue, would therefore be well advised to test the RNA fraction for the presence of DNA (e.g., by CeriottiJslB procedure for deoxypentose) and, if the test is positive, to explore the earlier stages of the determination for possible degradative effects on DNA. Occurrence of insoluble residues at the end of alkaline digestion-Schmidt and Thann- hauserg found that all tissues examined by them, with the exception of bone, were completely dissolved on exposure to N alkali at 37" C for 15 hours.However, some other using the same conditions of alkaline digestion, have observed a small residue of insoluble material. Davidson, Frazer and H ~ t c h i s o n ~ ~ showed that the insoluble residue from alkaline digests of rabbit liver contained little phosphorus, and May and Grenelllg found that the nucleic acid content of the insoluble residue from digests of brain corresponded to only 0.5 per cent. of the tissue DNA. On the other hand, the Schmidt - Thannhauser procedure can seriously underestimate the DNA content of some micro-organisms because of losses of DNA in alkali-insoluble residues. Part of the DNA of Streptococcus faecalis has been reported123 to be insoluble in alkali through For animal tissues this seems not to be of importance.782 HUTCHISON AND MUNRO: THE DETERMINATION OF NUCLEIC [Vol.86 being firmly bound to cell polysaccharides, and much of the DNA of Mycobacteria remains insoluble at the end of alkaline digestion in a residue probably lipoidal in nature.136 Downing and S~hweigertl~~ report that two-thirds of the DNA of Euglena graciZis and of Lactobacillus Zeichmanii remains undissolved after treatment of the lipid-free material with N potassium hydroxide at room temperature for 20 hours, but Smillie and K r ~ t k o v ~ ~ had no difficulty in dissolving all the nucleic acid of Euglena in N potassium hydroxide at 37" C.In Chlorella they observed an insoluble residue with no significant phosphorus content. In yeast cells submitted to the Schmidt - Thannhauser procedure, it has been reported13* that there is an alkali-resistant polysaccharide residue containing a considerable amount of phosphorus, mostly in the form of metaphosphate. It can be concluded that residues observed at the end of digestion of mammalian tissue preparations are not likely to constitute a serious hazard to analysis, but that, in micro- organisms, where the DNA is not confined within a nuclear structure, alkali-insoluble material is liable to retain significant amounts of DNA. In order to evaluate the significance of residues observed at the end of alkaline digestion, the total phosphorus content should be determined.Further, the residue can be extracted with hot TCA136 or with hot PCA19 and the extract examined for pentose and deoxypentose, by appropriate sugar reactions, and for ultra-violet absorption at several wavelengths. METHODS USED FOR SEPARATING RNA AND DNA AFTER ALKALINE DIGESTION- In the original Schmidt - Thannhauser9 procedure, DNA and protein are precipitated at the end of alkaline digestion by adding hydrochloric acid and TCA. This particular mixture seems to possess no special virtues ; indeed, when ultra-violet measurements have subsequently to be made, TCA should be avoided because of its high absorption. Other methods of acidification can be used, such as addition of hydrochloric acid,139 acetic acidlog or a mixture of acetic acid and ethan01,l~~J~l the order of addition being important,35 or TCA and ethan01.l~~ When the production of an ion-free solution is an advantage, as when the ribo- nucleotides are subsequently separated by chromatography or ionophoresis, the specimen can be incubated with potassium hydroxide and the digest then acidified with PCA to remove the K+ ions as the sparingly soluble potassium perchlorate (e.g., Davidson and SmellielO7; Scarano and Kalckarla; Schmidt14).An ion-free solution can also be obtained by acidifying the digest with a cation-exchange resin in the hydrogen form.96,97 When the amount of DNA to be recovered is small, Schmidt, Hecht and ThannhauserlU recommend addition of egg albumin to the alkaline digest in order to provide a bulky precipitate on acidification.On one occasion, when the DNA may have been partially degraded in the earlier stages of the determination, Smillie and K r o t l t o ~ ~ ~ found that addition of magnesium ions after acidi- fication of the digest facilitated precipitation of the DNA, as suggested by Markham.12 The usual procedure is to acidify the digest so as to bring the pH down to 1 and then to remove by centrifugation the precipitated protein and DNA, finally washing the precipitate once or twice with dilute acid. The supernatant fluid and washings are combined and analysed for ribonucleotides, the precipitate being retained for measurement of DNA. The procedure of washing once or twice with acid appears to provide virtually complete separation of RNA from DNA, as judged by the failure of Daoust and Hooper26 to extract more phosphorus from the DNA precipitate by further washing.Further, several investigators have found less than 1 to 2 per cent. of the total RNA of the tissue in the DNA fraction, as indicated by pentose assays32J39 or by examination for uraci1.lZ2 When 15N-labelled yeast RNA was added to samples of rat liver, Furst, Roll and recovered 4 per cent. of the labelled RNA in the DNA fraction precipitated after alkaline digestion, but they have provided no details of their procedure for acid precipitation and washing of the precipitate. More serious contamination of the protein precipitate with RNA is claimed by Cooper and Loring,146 who examined the acid-precipitable phosphorus after digesting a purified virus containing RNA ; some 12 per cent.of the phosphorus of the digest could not be washed out of the precipitate; however, on re-dissolving the precipitate in alkali and precipitating again, this was reduced to 1 or 2 per cent. Finally, procedures other than acidification can be used to separate the ribonucleotides from the DNA of the alkaline digest. Nygaard and R ~ s c h l ~ ~ added 2 volumes of ethanol to the digest, and McIntire and Spr0ull7~ used protamine to precipitate a few pg of DNA from alkaline digests of tissue culture cells. Passage of the alkaline digest through ion-exchange columns also permits the ribonucleotides to be separated from the DNA.148 The use ofDecember, 19611 ACIDS IN BIOLOGICAL MATERIALS. A REVIEW 783 paper electrophoresis to separate RNA from DNA has been explored,149 but has not been placed on a quantitative basis.THE RNA FRACTION OF THE ALKALINE DIGEST- Determination of the phosphorus content of the RNA fraction-Schmidt and ThannhauseP considered that the RNA fraction obtained on acidifying the alkaline digest consisted of ribonucleotides contaminated by a “negligible” amount of inorganic phosphate, which, in view of the findings of Plimmer and Bayliss,lso was considered to be derived from phospho- protein. They therefore assumed that the phosphorus content of the fraction could be used as a measure of the amount of RNA in the tissue. Although such an assumption has serious limitations (see below), many investigators have so employed phosphorus determina- tion, and it is therefore appropriate to consider briefly here the methods available.Procedures for phosphorus analysis have been excellently reviewed by Lindberg and Ernster151 and are partly covered by LeLoir and Cardini.152 Because of the small amount of phosphorus present in the RNA fraction, classical gravimetric procedures are generally not applicable, and the first step commonly involves conversion of organic phosphorus to inorganic orthophosphate by wet ashing of the nucleic acid fraction with sulphuric acid,153 PCA15*9155 or a mixture of sulphuric acid, copper sulphate, potassium hydrogen sulphate and selenium dioxide,156 first used by Ma and 2 ~ a z a g a . l ~ ~ Digestion with PCA is occasionally explosive and should be carried out with caution. It is worth noting that Jones, Lee and P e a c ~ c k e l ~ ~ observed that, if the digestion of DNA were carried out with YCA alone, a period of up to 7 hours was necessary for the quantitative conversion of the DNAP to orthophosphate, whereas with the Ma and 2 ~ a z a g - a ~ ~ ~ mixture digestion was complete in 45 minutes.The orthophosphate produced by the ashing process is allowed to react with molybdic acid to produce a complex, which can be reduced to a blue compound. Although in the original method of B r i g g ~ l ~ ~ the use of molybdic acid was recommended, most subsequent variants involve use of ammonium molybdate solutions; similarly, the use of hydroquinone by Briggs158 for the final reduction has been supplanted by a variety of compounds such as l-amino- 2-naphthol-4-sulphonic acid,153 ,159 ?160 amidol (2,4-diaminophenol hydrochloride) 155 ?161 and stannous ch1oride.lG2 ,163 The main problem confronting the worker in the nucleic acid field is that of finding a method adequately sensitive a t the low concentrations of phosphorus encountered. For many purposes, the Allen155 procedure is adequate, especially if the volumes used are scaled down to give a final volume of 5 ml, so that the range of the method is between 4 and 40 pg of phosphorus.When this is inadequate, recourse may be had to methods involving extraction of the blue complex into an organic ~ ~ l ~ e n t ~ ~ ~ $ ~ G ~ or heating to increase the colour intensity.los ,lrn An ultra-micro method, based on the colour change of quinaldine red, has also been describedlG4 and has been claimed to have a range of 0.02 to 0-2 pg of phosphorus per ml, 15 times as sensitive as the Fiske - Subbarow procedure.Several authors have explored the problem of whether or not the amount of phosphorus present in the RNA fraction of the alkaline digest adequately represents the true RNA content of the tissue. Schmidt and Thannhauserg considered that the only non-RNA phosphorus present was a “negligible” quantity of inorganic phosphate arising from the break-down of phosphoprotein in the alkali.150 Davidson, Frazer and H u t c h i s ~ n , ~ ~ MOUE^^ and A n n a ~ 7 ~ confirmed that contamination of this type was small. However, accumulated evidence points to the presence in the RNA fraction of considerable amounts of organic phosphorus compounds other than ribonucleotides. For nervous tissue Logan, Mannell and Rossiterl’ showed that 50 to 65 per cent.of the phosphorus present in the RNA fraction of the alkaline digest was not RNA phosphorus. In the same year, Davidson and Smellie165 demonstrated that the RNA fraction from rat liver contained at least six phosphorus compounds (including inorganic phosphate) other than ribonucleotides. This material amounted to some 20 to 25 per cent. of the phosphorus in the fraction. Subsequent investigationl66 showed that several of these contaminants are peptide in nature and that phosphoserine is present as well. The RNA fraction was found to contain also free inositol, inositol monophosphate and, from brain, inositol diphosphate. In the RNA fractions obtained by alkaline digestion of micro-organisms, other phosphorus-containing contaminants have been observed.Working with yeast Juni, Kamen, Reiner and S~eigelmanl~~ observed that 67 per cent. of the combined phosphorus of the RNA fraction was hydrolysable in 7 minutes by N acid at 100” C and was identified as metaphosphate. Mitchell and MoylelG7 91689169 and Jones, Rizvi and Staceyl’O784 HUTCHISON AND MUNRO: THE DETERMINATION OF NUCLEIC [Vol. 86 have reported the occurrence of glycerophosphate as a contaminant in the RNA fraction obtained from bacteria. In animal tissues, there appears to be neither m e t a p h ~ s p h a t e ~ ~ , ~ ~ nor glycerophosphate.166 The presence of appreciable amounts of non-RNA phosphorus in the RNA fraction of the alkaline digest also emerges when the phosphorus content of this fraction is compared with the results of other procedures for determining its RNA content.In Table 11, results TABLE I1 OF THE PHOSPHORUS CONTENT AS 100 per cent. SCHhlIDT - THANNHAUSER RNA FRACTION ANALYSES CALCULATED ON THE BASIS Species Rat . . . . Hat (pregnant). . Kat . . Rat (fasted) Rat . . Mouse . . Guinea pig Rabbit . . Dog . . Calf . . Fowl . . Sea urchin Chlorella Tissue Liver Liver . . Liver nuclei . . Liver nuclei . . Kidney Pancreas Spleen Thymus Adrenal Brain . . Liver nuclei Mammary tumour Skin GuCrin carcinoma . . Seminal vesicle . . Liver Liver nuclei Grey matter . . White matter , . Thymus nnclei . . Liver Spleen Erythrocyte nuclei . . Embryo Ultra-violet Orcinol absorption - 85 85" - 75 86" - - 124 68t 80 84 79 79 92 95 71 87 75 90 64 59 84 60 155 143 95 86 72 25 57 67 82 79 60 64 43 84 71 - M.pyogeiaes 70 M. pyogenes var. uweus - Author and reference Schneide~-171 Campbell and Kosterlit~17~ Mo~16l'~ Tsanev and Markov47 Campbell and K0sterlitz17~ McIndoe and Davidsonl28 McIndoe and Davidson128 Schneider171 Schneider171 Mandel, Jacob and Mandell74 Schneiderl71 Mandel, Jacob and Mandell74 Schneiderl'l Mandel, Jacob and Mandell74 Schneider17l NashS3 Drashersg Tsanev and Mark09 Tsanev and Markov47 Humphrey and Kellermanl76 Davidson, Frazer and Hut- McIndoe and Davidson128 ~0~16179 ~0~16173 chison2* ~ 0 ~ 1 ~ 1 7 3 ~0~16173 ~ 0 ~ 1 6 2 3 ~0~16173 ~ 0 ~ 1 6 2 3 ~0~1.5173 McIndoe and Davidsonl28 McIndoe and Davidson128 Elson, Gustafson and Chargaffs6 Smillie and Krotkovs2 Mitchell and Moylels8 Mitchell and Moylel67 * Phloroglucinol method used. t Based on ultra-violet absorption at two wavelengths.obtained on a variety of biological materials by the orcinol or phloroglucinol procedures and by ultra-violet absorption are expressed as percentages of the total phosphorus content of the RNA fraction. As discussed later, both pentose and ultra-violet determinations of RNA in this fraction can involve errors that usually cause over-estimation of the RNA present. Xevertheless, it is a striking feature of the results recorded in Table I1 that, except for the high orcinol values observed by Tsanev and Mark0~,4~ all the pentose and ultra-violet results show a considerably lower value than the phosphorus content of the RNA fraction would appear to demand. The discrepancy is particularly large for fowl erythrocyte nuclei and nervous tissue.The RNA contents of the alkaline digest assessed by other methods are ansistent with the picture provided by Table 11. With Streptococcus faecalis, Sherratt and ThomaslZ3 showed that the sum of purine and pyrimidine bases accounted for 85 per cent. of the total phosphorus present in the RNA fraction of the alkaline digest; for tobacco-leaf chloroplasts Cooper and L ~ r i n g ~ ~ observed that the purine and pyrimidine contents of the RXA fraction were sufficient to account for only 91 per cent. of the total phosphorus in thisDecember, 19611 ACIDS I N BIOLOGICAL MATERIALS. A REVIEW 7 85 fraction. As discussed earlier, the ionophoretic studies of Davidson and Si~ielliel~~ on the RNA fraction of rat liver led to the conclusion that only 75 to 80 per cent.of the phosphorus in this fraction could be accounted for as ribonucleotides. Since phosphorus determinations made on the RNA fraction of the alkaline digest over- estimate the true RNA content for most tissues by some 20 per cent., and occasionally b>- much larger amounts, alternative methods of measuring RNA contained in this fraction must be considered. They include determination of pentose, determination of ultra-violet absorption and isolation of nucleotides 0 1 - bases from the RNA fraction. Determination of the pentose content of the RNA fraction-A number of colorimetric procedures for pentose have been applied to the determination of RNA, namely, reaction with orcinol, phloroglucinol, aniline, carbazole, cysteine or anthrone.Of these, the commonest is the orcinol reaction of Bia1.176 This was first applied to analysis of nucleotides by Dische and Schwarzl77 and has since undergone numerous modifications, the most widely quoted being that of Mejbau111.l~~ The applications of the orcinol procedure have been summarised in a number of review articles.11,12 9179,180~18191829183 The orcinol determination of ribose will here be considered in relation to (a) the optimum concentration of reactants and the time of heating, (b) the extent of reaction of ribose in RNA with orcinol and (c) the occurrence in biological materials of substances other than ribose that can react with orcinol. The orcinol reaction depends on the hydrolysis of the nucleic acid by acid at 100" C to yield furfural from the ribose.This then reacts with orcinol to yield a green pigment. In the original procedure, ferric chloride was used as the catalyst, and most workers have continued to employ this, but some have used ammonium ferric s ~ l p h a t e , ~ ~ ? ~ ~ ~ and a few, such as Ceri0tti,3~ have followed the practice of Barrenscheen and Pehamls6 in using cupric chloride. Finally, some have extracted the green solution with butanoll87 or isopentyl alco- h01,~~ P~ with consequent increase in the sensitivity pf the method through concentration of the pigment. In the original procedure of Dische and Schwarz,17' the reagents were added to give a final concentration of 7.7 N hydrochloric acid, 0.06 per cent. of ferric chloride (FeCl,.GH,O) and 0.14 per cent.of orcinol, and these were heated with the specimen for 3 minutes at 100" C. Table I11 shows that the concentrations of all three reagents and the TABLE I11 SOME VARIATIONS IN THE CONDITIONS OF THE ORCINOL REACTION FOR PENTOSE (IN ORDER OF PUBLICATION) Final normality of hydrochloric acid * 7-7 6-0 6.0 5.8 7.1 7.1 5.7 6.0 5.7 5.7 8.2 4.0 5.7 6.0 8-0 6.0 8.6 5.7 8.2 6-0 9.0 6.0 Final concentration of FeCl,.6H20, % 0-06 0.05 0.05 0.01 0.06 0.15 0.05 0.50 0-03t 0.48 0.01 0.04 0.02 0-05 0.03 0.01 0.18 0.05 0.02 0-25 0-015 0.01 Final concentration of orcinol, 0.14 0.50 0.50 0.29 0-15 0.15 0.48 0.50 0.48 0.48 0.4 1 6-00 0.48 0.50 0.27 0.48 0.18 0.48 0-41 0.50 0.015 0.30 % Time of heating, minutes 3 20 30 20 20 3 45 40 45 45 20 30 11 60 15 45 8 40 20 20 15 30 -4uthor and reference Dische and Schwar~f'~ Mej b a ~ r n l ? ~ S~hlenk18~ Kerr and Seraidarianls0 McRary and Slatterylgl ; R r o ~ n ~ ~ ~ Militzerla7 Albaum and Umbreitlg3 Schlenk and Waldvogelfg4 D r ~ r y l * ~ Belj anski and Macheboeu f lS5 Morse and CarterfgG Caldwell and Hinshelwoodfg7 Ogur and Rosen16 Lusenals8 Hurlbert, Schmitz, Brumm and Potterleg Rege and Sreenivasan200 Markhaml2 AshwelPa2 Iverson and G i e ~ e ~ ~ Schneiderl81 Ramaiah, Antoni and Hutchison202 Stuy201 * Based on the assumption that when the author states that concentrated hydrochloric acid was used.t FefNH,\ISO.I ..12H,O calculated as FeCl,.6H,O. this means 12 N hydrochloric acid.786 HUTCHISON AND MUNRO : THE DETERMINATION O F NUCLEIC [Vol. 86 time of heating have been extensively varied by different users of this reaction.Miller, Golder and Miller203 made a systematic study of the effect of different conditions of reaction on the final colour developed with RNA. This was increased by raising the concentrations of acid, iron or orcinol up to a certain maximum level, after which further increments in reagent concentration resulted in less colour being formed. The rate at which the colour developed could be accelerated by increasing the concentration of orcinol or of acid, but was relatively uninfluenced by the concentration of iron. Under optimal conditions, the reaction with RNA was essentially complete after 30 minutes' heating at 100" C. Miller, Golder and Miller203 point out that the choice of suitable conditions for carrying out the reaction is dictated by two opposing considerations : with increasing amounts of reagents, colour develop- ment rises to a maximal value, but at the same time the reading of the blank is also aug- mented; they concluded that the conditions used by DrurylN (see Table 111) provide the best compromise.We have found that the somewhat lower concentrations of orcinol and of iron used by Kerr and Seraidarianlgo are satisfactory if the heating time is prolonged to 30 minutes.202 In agreement with Kerr and Seraidarian,lgo we found the colour formed under their conditions not to fade appreciably for several hours; some authors working under different conditionslg2 9 1 g 9 observed definite fading over short periods of standing after completion of the reaction.The reaction of orcinol with the ribose of RNA is complicated by the fact that the purine-bound ribose of RNA reacts much more readily than pyrimidine-bound ribose. The latter is not completely unreactive, however, and has been observed to give a colour repre- senting from 3 to 10 per cent. of the ribose attached to the pyrimidine.195y2"s205 As pointed out by Webb and Levy,16 large differences in purine - pyrimidine ratio can sometimes exist between different species of RNA, extremes of 2.13 for Mycobacterium $hZeiZo6 and 0.66 for turnip yellow mosaic virus207 being recorded. Consequently, the value to be assigned to the result obtained from the orcinol reaction and other carbohydrate reactions for RNA will depend on the proportion of purine and pyrimidine nucleotides in the molecule; the standard used should ideally consist of pure RNA isolated from the tissue on which the determinations are being carried out.In this connection, Massart and Hoste208 offer a method of obtaining full reaction from the pyrimidine-bound pentose by first brominating the pyrimi- dine ring before submitting these nucleotides to reaction with orcinol; however, Kerr, Seraidarian and Wargon209 were unable to apply this procedure successfully to RNA. Like other sugar reactions, the orcinol reaction suffers from lack of complete specificity. Interference has been noted from the presence of hexoses,lg2 y210s211 s212 sucrose,213 pento- sans16 9214 9215 polyuronides,16 s 2 l 0 heptoses and their ph0sphates,l8~ y 2 1 2 polysaccharides,l93 glyco- gen,210 s 2 l 6 large amounts of pr0tein,l7~ 91949210 phosphates,16g TCA39 and DNA.ls1 In some instances methods have been devised for dealing with the interference ; for hexoses, these include extraction of the interfering substance,lg2 taking readings at two wavelengthslg2 or destruction of the hexose by heating in alkali.211 Interference by protein can be eliminated by extracting the coloured product with pentyl alcohol.194 Many of the potential causes of error in the orcinol determination of ribose have not been examined in the context of nucleic acid analysis.With the Schmidt - Thannhauser procedure, only a few authors have reported difficulties in applying the orcinol reaction to the RNA fraction. Juni, Kamen, Reiner and Spiegelmanl38 observed a brown colour when the orcinol reaction was applied to the RNA fraction of yeast, presumably due to the presence of polysaccharide; the amount of this contaminant was sufficient to render the orcinol reaction valueless as a means of determining RNA.Smillie and K r ~ t k o v ~ ~ observed the occurrence of orcinol-reacting polysaccharide in the RNA fraction obtained from plant material; acceptable orcinol values could be achieved by first passing the RNA fraction through an anion-exchange column to remove the contaminants. Satolg2 used 4 volumes of ethanol to precipitate polysaccharide material from the RNA fraction of bacteria. In contrast to these experiences with plant materials, Table I1 shows that direct application of the orcinol reaction to the RNA fraction obtained from animal tissues has generally provided slightly lower estimates of RNA content than those obtained by ultra-violet measurements on the same fraction, thus suggesting the absence of gross con- tamination by orcinol-reacting substances other than RNA.An exception to this are the high orcinol values noted by Tsanev and Markov*' in the RNA fraction of animal tissues, including liver, which do not accord with the experience of others quoted in Table 11. "he conclusion that large amounts of orcinol-reacting impurities are confined to digests ofDecember, 19611 ACIDS I N BIOLOGICAL MATERIALS. A REVIEW 787 yeast and plant materials receives some support from the studies of Deken-Grenson and Deken.217 They used Dowex-2 resin to remove orcinol-reacting impurities from the RNA fraction of various tissues submitted to alkaline digestion, and it is apparent from their results that large changes in orcinol value after purification occurred with plant material and yeast specimens, whereas the values obtained for RNA fractions derived from bacteria and from liver were only slightly reduced (5 to 10 per cent.) by treatment with the resin.Fleck and Munro38 have made a more detailed study of the orcinol reaction applied to the RNA fraction of liver after various conditions of alkaline digestion. When the specimens were digested for 1 hour at 37" C in N or 0.3 N alkali, all the RNA of the tissue became acid-soluble and the orcinol reaction provided a reasonable measure of the amount of RNA present. After 24 hours' digestion in alkali, the orcinol value had risen by about 8 per cent., and this coincided with the release of protein into the acid-soluble fraction of the digest.It thus appears that prolonged digestion in alkali causes release of some orcinol-reacting impurities and thus increases the error of determining RNA. Wavelength, rnp Fig. 3. Ultra-violet absorption spectra in 0.1 N PCA of : curve A, pure rat liver RNA after hydrolysis in 0.3 N potassium hydroxide for 18 hours at 37" C ; curve B, commercial yeast RNA after hydrolysis under similar condi- tions; curve C, the polypeptide material appearing in the Schmidt - Thann- hauser RNA fraction. The spectra of all three have been adjusted by calcu- lation to give the same optical density at 275 mp, which is the maximum absorption of the polypeptide.(Repro- duced from Fleck and Munro3*) Alternative reactions to the orcinol procedure have been used for determining ribose, but none has been so extensively explored. The reaction with phloroglucind,210 s212*218 although more specific than that with orcinol, requires about five times the amount of ribose. The furfural formed by heating RNA with strong mineral acid can be trapped in xylene or by distillation and then made to react with aniline acetate,127 9142,219 s220 j5-bromoaniline221 or P-bromophenylhydrazine.222 These procedures are all more complicated to perform than788 those of the orcinol method. The c a r b a ~ o l e ~ ~ ~ , ~ ~ * and cysteine2259226 9227 reactions are more commonly used to assay DNA, but under suitable conditions can be applied to RNA; both reactions are subject to interference by other sugars.Finally, the anthrone reagent , originally developed for the determination of hexoses,228 has been successfully adapted to determining pentoses,229~230~231,232~233 but there appear to be no special advantages in its use. Determination of the ultra-violet absorption of the RNA fractio-The intense and charac- teristic absorption of ultra-violet light by purine and pyrimidine bases in the region of 260 mp provides a method of measuring the ribonucleotides in the acid-soluble fraction produced by the Schmidt - Thannhauser procedure, but the use of ultra-violet absorption is compli- cated by the fact that proteins and peptides also absorb ultra-violet light a t similar wave- lengths (Fig. 3).Several author^^^^*^ 912' 9166323491709217 have shown the Schmidt - Thannhauser RNA fraction to contain protein-degradation products that absorb ultra-violet light. Con- sequently determination of the RNA content of this fraction by ultra-violet absorption at 260mp will give erroneously high readings. The magnitude of the error can be con- siderable under the usual conditions of digestion continued for 15 hours or more. Scott, Fraccastoro and Taft73 measured the ultra-violet absorption of the RNA fraction obtained from specimens of liver, kidney and spleen that had been digested in N alkali at room temperature for periods up to 24 hours. Although all the RNA became acid-soluble during the first hour of incubation, the ultra-violet absorption of the RNA fraction continued to rise; inspection of their graphs shows that 24 hours' digestion contributed an additional 15 to 25 per cent.to the absorption at 260 mp. Fleck and Munro3* confirmed that continued alkaline digestion results in progressive degradation of tissue protein , yielding acid-soluble products that absorb ultra-violet light. When rat-liver samples were digested for 1 hour in 0.3 N alkali a t 37" C, these degradation products accounted for about 1 per cent. of the ultra-violet absorption of the RNA fraction; after 24 hours' digestion in N alkali ultra-violet absorption at 260 mp over-estimated the RNA content of the fraction by about 35 per cent. Jones, Rizvi and Stacey170 submitted bacteria to digestion for 15 hours in N alkali at 37" C and observed that about 30 per cent.of the ultra-violet absorption of the RNA fraction was due to non-nucleotide contaminants, mainly peptides. Deken-Grensen and Deken217 used an ion-exchange resin to remove the ultra-violet absorbing contaminants from the RNA fraction prepared by digesting a variety of tissues and organisms in N alkali for 20 hours; the ultra-violet absorption of the RNA fraction was on occasion reduced by as much as 70 per cent. after this treatment. These findings show that the RNA content of the tissue can be seriously over-estimated by measuring at 260 mp the ultra-violet absorption of the acid-soluble fraction obtained during the Schmidt - Thannhauser procedure. Some authors have attempted to correct for the extra absorption by taking readings at two wavelengths.The spectra of RNA and of the contaminating peptide material differ (Fig. 3), and it is consequently possible to compute the amount of RNA in a mixture by taking readings at the maximum absorption of RKA (260mp) and at one other wavelength (e.g., 280mp) and applying an equation based on the ultra-violet absorption of RNA and of the contaminant material at each of these wave- lengths.38 This principle was first applied by Warburg and Christian'35 to measure the amount of RNA in mixtures of yeast RNA and enolase, under conditions in which the spectra of both the RNA and the enzyme protein had been adequately established. A special instance of this principle occurs when it is possible to choose two wavelengths at which the peptide contaminant absorbs the same amount of ultra-violet light; for example, Fig.3 shows the spectrum of non-dialysable peptide material prepared from the acid-soluble fraction of liver samples digested in N alkali, and it is apparent that this material absorbs the same amount of ultra-violet light at 284mp as at 260mp. Consequently, if the amount of ultra-violet light absorbed by the acid-soluble fraction of the liver digest is measured at these two wavdengths, any excess absorption at 260 mp over the amount of light absorbed at 284 mp can be ascribed to the presence of RNA. It is presumably for this reason that some authors measuring the ultra-violet absorption of the RNA fraction of the alkaline digest have preferred to use the difference between the absorptions at 260 and 280mpl75 or at 260 and 290mp,80~95~128 though in none of these instances was it established that the choice of wavelengths completely eliminated absorption by peptides.A rigorous examination of the wavelengths required to provide these conditions has recently been made by Tsanev and MarkovJQ7 who concluded that the peptides contaminating the acid-soluble fractions from HUTCHISON AND MUNRO : THE DETERMINATION OF NUCLEIC [Vol. 86December, 19611 ACIDS IN BIOLOGICAL MATERIALS. A REVIEW 789 a wide variety of tissues had essentially the same spectrum. In order to eliminate absorption by these contaminants, Tsanev and hlarkov digest the tissue in N alkali a t 37" C for 18 hours and take readings of the absorption of the acid-soluble fraction at 260 and 286 mp. However, Fleck and i C l ~ n r o ~ ~ have pointed out that the procedure lacks precision, because (a) the method of obtaining the spectrum of acid-soluble peptide material is not above criticism, (b) the absorption of RNA at 286 mp relative to its absorption at 260 mp is not constant for different tissues, as Tsanev and Markov assume, but varies considerably as is shown for yeast RNA and liver RNA in Fig.3 and (c) the RNA absorption at 286 mp will depend on the degree of deamination of cytidylic acid in N alkali at 37" C, referred to earlier. Fleck and Munro38 attempted to find conditions under which a reliable correction for protein-degradation products could be obtained, but were unable to do so. They concluded that the use of ultra-violet absorption to measure RNA by the Schmidt - Thannhauser procedure should be restricted to analyses involving short periods of digestion, since this results in least contamination of the RNA fraction by acid-soluble peptide material.Several authors33 s38 , 7 3 9 9 4 have demon- strated that a 1-hour period of digestion in 0-3 N or N alkali is sufficient to release all the RNA from a variety of tissues in an acid-soluble form. This would therefore seem a suitable period of digestion to choose. Ultra-violet absorption measurements made on RNA fractions prepared in this way will not show anomalous readings because of the hyperchromic effect produced by depolymerisation in alkali,2361237y238 since 1 hour's digestion in 0-3 N alkali at 37" C is adequate to carry the hyperchromic effect to c ~ m p l e t i o n .~ ~ Quantitative separation of bases and nucleotides in the RNA fraction-In theory, an un- equivocal value for the amount of RNA in the acid-soluble portion of the alkaline digest can be obtained by quantitative isolation of the individual nucleotides or bases present in the RNA fraction. This may be attempted (a) by separating the ribonucleotides already liberated during alkaline digestion, (b) by degrading the ribonucleotides with concentrated PCA to yield free bases, which can then be separated, or (c) by using mild acid hydrolysis to provide a mixture of free purine bases and pyrimidine nucleotides, which are then separately assayed. Ribonucleotides released by alkaline digestion have been separated quantitatively by paper-chromatographic proced~res~5J~0~~39 and by ionophoresis.lo7 J65 9240 The products of alka- line digestion have also been separated on ion-exchange c01umns,~~1 and this procedure has been used to recover ribonucleotides quantitatively.76 ,lo3 9 1 4 * Finally, Montreuil and Bou- have used a technique involving partial separation of nucleotides on a De-Acidite column and paper chromatography.All such procedures involve inherent sources of error, for, as mentioned earlier, there is no guarantee of complete resolution of RNA to mono- nucleotides by the alkaline-digestion procedure of Schmidt and Thannhauser. For example, Finamore and Volkinlo3 have recently recorded the presence of 10 and 20 per cent. of alkali- resistant oligonucleotides in two fractions of RNA extracted from amphibian eggs. Conditions suitable for liberating free bases from RNA have been reviewed by Wyatt.242 The most commonly used procedure is that of Marshak and V0ge1,~~~ in which the specimen of RNA is digested in 72 per cent.PCA a t 100" C for 1 hour and the free bases are then separated by paper chromatography. Several 9124 y201 have applied this procedure to analysis of the RNA fraction from the Schmidt - Thannhauser method. However, it has been repeatedly n o t e d 3 5 ~ ~ ~ ~ that the method of digestion with concentrated PCA does not liberate pyrimidine bases quantitatively from the corresponding nucleotides, especially in presence of protein.245 Markham12 recommends a 2-hour period of hydrolysis for complete liberation of bases. The chromatographic separation of the free bases from the charred material left after PCA digestion can also make this procedure difficult to control.L ~ r i n g ~ ~ ~ has reviewed the conditions under which RNA can be hydrolysed by acid to yield purine bases and pyrimidine nucleotides. When RNA is heated at 100" C in N hydro- chloric acid for 1 hour, the purine bases are completely liberated as free adenine and guanine, whereas the pyrimidine bases remain in the form of nucleotides, except for about 5 per cent. degraded to nucleo~ides.~~7 These conditions of mild acid hydrolysis have been applied to analysis of the RNA fraction obtained after alkaline digestion. V e n d r e l ~ l ~ ~ ? ~ ~ ~ precipitated the purine bases as their copper salts and determined the nitrogen. A more elegant procedure is to separate the digest into two fractions, one purine and the other pyrimidine; the amounts of adenine and guanine or cytosine and uracil are then determined by measuring the uitra- violet absorption of each fraction at two wavelengths.In order to obtain independent[Vol. 86 purine and pyrimidine fractions, Kerr, Seraidarian and Wargon209 precipitated the purine bases as their silver salts, with subsequent precipitation of the silver derivatives of the pyrimidine nucleotides. Loring and his colleagues55 9248 also precipitated the purine bases as silver salts, but degraded the pyrimidine nucleotides with phosphatase to nucleosides before measuring their ultra-violet absorption ; they removed ultra-violet absorbing amino acids from the pyrimidine nucleoside fraction by passing it through Dowex-1 resin.describes a modification in which labelled purines are added to the RNA fraction and the amount of adenine and guanine present in the silver precipitate is measured by isotope dilution. Finally, Kleinschmidt and man the^^^ have devised a modification of the Schmidt - Thannhauser procedure in which, after hydrolysing the RNA fraction with acid, they fractionate the purine bases and pyrimidine nucleotides by two-dimensional paper chromatography ; they do not mention the production of pyrimidine nucleosides during their assay procedure. All of these procedures for obtaining quantitative recovery of bases or nucleotides are technically more complicated than the common procedures for measuring RNA, and most are unsuited to use for analysing a large number of samples. They may be kept in reserve for conditions in which other analytical procedures have not led to acceptable values for RNA.Even so, their limitations should be clearly recognised. This is brought out by a comparison of different methods of measuring the purine and pyrimidine components of RNA made by Crosbie, Smellie and D a ~ i d s o n . ~ ~ ~ They analysed a specimen of yeast RNA by chromato- graphy of the bases after digestion in 72 per cent. PCA, by paper chromatography of purine bases and pyrimidine nucleotides after hydrolysis in N hydrochloric acid and by ionophoretic separation of nucleotides after alkaline hydrolysis. Recoveries corresponding to 86, 89 and 97 per cent., respectively, of the phosphorus content of the RNA specimen were obtained by the three procedures. 790 HUTCHISON AND MUNRO THE DETERMINATION OF NUCLEIC THE DNA FRACTION OF THE ALKALINE DIGEST- The fraction of the alkaline digest precipitated on acidification contains the DNA of the tissue and most of its protein.In order to analyse the precipitate for DNA, it can be dissolved in alkali.24 Alternatively, in Schneider's171 modification of the Schmidt - Thann- hauser procedure, the fraction is extracted with hot acid in order to obtain the DNA free from contamination with the protein, which would interfere with some colorimetric reactions for deoxypentose and with ultra-violet measurement of DNA. The extraction is usually done with 5 per cent. TCA or with 5 per cent. (0.8 N) PCA at 90" C for 15 rninutes.ll David- son129 recommends extraction with 3 per cent.(0.5 N) PCA at 80" C for 10 minutes. A number of authors have encountered difficulties with the Schneider modification. Using TCA, DrasheP found that shortening of the time of extraction led to reduced recovery of DNA, and Badolato and Calabre~el~~ observed that TCA was much less effective than PCA in extracting DNA. Marshak and Marshak122 record an 85 per cent. recovery of thymine extracted with hot TCA from the DNA fraction of echinoderm germ cells. On the other hand, the use of PCA at 90" C has been found to result in destruction of some deoxypentose, since higher values were obtained when the temperature of extraction was reduced to 70" C.217 In using the extract for ultra-violet measurement of DNA, it has been found impossible to obtain conditions under which hot PCA will remove all the DNA from the precipitate without also extracting some of the protein and in consequence giving rise to erroneously high ultra-violet readings.7a 9251 Because of these findings, it would seem preferable to dissolve the DNA fraction in alkali as a preliminary to analysis.As with the RNA fraction, the amount of DNA present can be determined by measuring the phosphorus, from the sugar component (deoxypentose) , by ultra-violet measurement or by isolation of the bases or nucleotides. Determifiation by phosphorus content-Schmidt and Thannhauser9 originally measured the DNA by subtracting the phosphorus content of the RNA fraction from the total amount of phosphorus in the alkaline digest, but Schmidt, Hecht and Thannhauserla modified the procedure so that the phosphorus content of the DNA precipitate was measured directly.A number of authors have reported good agreement between the phosphorus method for DNA and the results of deoxypentose measurements or ultra-violet absorption made on the DNA fraction d i r e ~ t l y ~ , ~ ~ s1289175 s262 ; agreement between these three methods has also been reported on hot acid extracts of the DNA f r a ~ t i ~ n . ~ ~ ~ ~ ~ ~ ~ ~ Two authors,47 s126 however, obtained considerably greater values for deoxypentose or ultra-violet measurements than Each of these will be considered separately.December, 19611 ACIDS I N BIOLOGICAL MATERIALS. A REVIEW 791 by phosphorus determination, and Tsanev and Mark~v*~ have interpreted this as indicating partial lability of the DNA phosphorus during alkaline digestion ; these findings and the conclusion drawn from them seem to be out of line with the satisfactory agreement found by the several other authors quoted above.Bourdet, Mandel and G ~ i l l e m e t ~ ~ ~ obtained for yeast lower values by diphenylamine than by phosphorus determination. Detenrt.ination by deoxypentose content-Several authors have reviewed in detail the available methods for d e o x y p e n t o ~ e . ~ ~ ~ l ~ ~ * ~ ~ ~ *182 Deoxypentose can be measured by reaction with diphenylamine, cysteine, indole, tryptophan, phloroglucinol, carbazole, p-nitrophenyl- hydrazine or anthrone. The reaction with Schiff's reagent, developed by Feulgen and R o ~ s e n b e c k ~ ~ ~ for histochemical identification of DNA, is not adequately sensitive for deter- minations on tissue extracts.The most frequently used method is the photo-electric adaptation257 of the diphenylamine reaction of D i s ~ h e , ~ ~ ~ which is suitable for the determination of 50 to 500 pg of DNA per sample or in one modification 25 to 250 pg of DNA258 and 1 to 2 pg of DNA as a micro modifi~ation.~5~ The sample is heated with diphenylamine in a mixture of glacial acetic acid and sulphuric acid for 10 minutes; Ishida260 claims that longer periods of heating are necessary to produce a stable colour, but other authors have been satisfied with the colour stability after 10 minutes' heating1@ Recently, Burton261 has introduced a modified di- phenylamine reagent containing acetaldehyde; the samples are heated at 30" C with this reagent for several hours. This procedure is about 3i-times as sensitive as the usual diphenyl- amine procedure, and Nigon and Daillie262 describe a micro method suitable for samples containing 0.3 to 1-8pg of DNA.The chemistry of the diphenylamine reaction has been studied by Stacey and his It appears that only the purine-bound deoxyribose contributes significantly to the colour produced when diphenylamine reacts with DNA. Brady and McEv~y-Bowe~~~ propose a method involving preliminarj- bromination, which allows the pyrimidine-bound sugar to react as well. In general, though most sugars react with diphenylamine, the colour produced differs from that with deoxyribose, and some of these spurious colour reactions can be eliminated by reading the absorbance of the final solution at two wavelengths.lsO These sugars are not likely tocon- stitute a serious hazard in nucleic acid determinations under the usual conditions, although in one study of yeast by the Schmidt - Thannhauser procedure the DNA fraction gave an atypical green colour with the diphenylamine reagent,138 presumably due to the presence of another carbohydrate in the DNA fraction.A more likely hazard in applying the diphenylamine re- action to the DNA fraction of the alkaline digest is the finding21s~368~269~270 that many proteins react with diphenylamine to give a colour. In studies on artificial DNA - protein mixtures, this source of error has been much reduced though not completely eliminated by extracting the DNA with hot TCA.218~268~270~271 Since the DNA fraction from the Schmidt - Thannhauser procedure contains most of the protein of the tissue, the application of the diphenylamine reaction directly to it should lead to erroneously high readings. In fact, reasonable agreement with phosphorus values has been reported by all authors who have applied both determinations directly to DNA fractions prepared from animal t i ~ ~ ~ e ~ .~ ~ 7 ~ ~ ~ ~ Further, C ~ h e n ~ ~ ~ has reported identical colour intensities per unit of phosphorus when the diphenylamine reaction was applied to thymus nucleohistone and to purified DNA. Bergold and P i ~ t e r ~ ~ ~ even dispute the finding of von Euler and Hahn21s that addition of serum albumin to samples of DNA enhances the colour formed after reaction with diphenylamine.With his modified diphenylamine procedure, Burton261 found that addition of a casein hydrolysate to DNA reduced the colour developed, in spite of the fact that casein hydrolysate gives a small amount of colour by itself. A claim that certain amino acids and purines can give spurious colours with diphenylamine274 has not been c0nfirmed.~6~ The reaction of deoxyribose with indole, first described by D i s ~ h e , ~ ' ~ has been modified by Ceriotti399133 to yield a method ordinarily suited to the measurement of as little as 5 pg of DNA and down to 0~2~76 or 0.1 pg277 in micro modifications. The sample of DNA is made to react with indole in 3 N hydrochloric acid for 10 minutes a t 100" C to give a yellow colour with a sharp absorption peak at 490mp. The reaction mixture is then extracted with chloroform, which leaves the yellow product from deoxyribose in the aqueous phase, but extracts completely the yellow or red pigments formed by other sugars and interfering substances that react in this test; only arabinose among the common sugars yields a colour $266 Various substances are known to interfere with the diphenylamine reaction.7932 HUTCHISON AND MUNRO THE DETERMINATION OF NUCLEIC [Vol.S6 not fully extracted by the chloroform treatment, but this is unlikely to be present in animal tissue preparations being analysed for DNA. K e ~ k ~ ~ ~ found that the arabinose error could tc eliminated by using pentyl acetate in place of chloroform as the extractant. Roiiting and suggest that the tedium of the chloroform extraction can be reduced by sub- stituting one extraction with 10 volumes of chloroform in place of the usual three extractions with 1 volume.In addition, the elaborate purification of the chloroform, which was originally recommended by C e r i ~ t t i , l ~ ~ has been found by us to be unnecessary and even disadvantageous, since it removes the small amount of ethanol added to analytical-grade chloroform to prevent decomposition. This finding has since beer, confirmed by Ceriotti (private communication). Some other sources of interference with the reaction have been noted. C e r i ~ t t i ~ ~ observed that, TCA, but not PCA, inhibits the reaction of indole with DNA, but could not confirm this and even found an increased range of linearity of the Ceriotti reaction when TCA was used to extract the DNA.N'aterlow and Weisz216 preferred TCA as an extractant for liver nucleic acids, on the grounds that PCA caused a decrease in the intensity of colour formed with indole, especially when the tissue extracts made with PCA were stored for an37 length of time. Park and U l l r i ~ h ~ 7 ~ have noted that ammonium formate gives with indole XI orange-pink colour not readily extractable with chloroform. Hctchison, Downie and Munro30 have applied the Ceriotti method directly to the DNA fraction of the Schmidt - Thannhauser procedure. They found that the values obtained from liver and spleen specimens were in good agreement with the phosphorus content of the DKA fraction. Similar values were obtained when the Ceriotti procedure was apFlied directly to the alkaline digest without separation of the DNA fraction.KO colour was obtained when the procedure was applied to samples of liver cell cytoplasm devoid of DNA. This indicates that protein, the other coiistituent of the DNA fraction by the Schmidt - Thannhauser procedure, does not interfere with the Ceriotti determination ; C e r i ~ t t i l ~ ~ observed no colour when casein hydrolysate was allowed to react with indole. Deken-Grenson and lIeken217 applied both the Ceriotti and diphenylamine procedures to hot PCA extracts of the GNA fraction prepared from plant, animal or bacterial sources. Excellent agreement between the two procedures was observed, although some of the deoxyribose had been destroyed by using 5 per cent.PCA at 90" C to make the extracts. Unspecified interfering substances have been encountered in hot sodium chloride extracts of beet petiole.279 Several authorPo $226 y 2 7 1 *280 928132823283 have studied the chemical reactions occurring between DNA or deoxyribosides and cysteine in sulphuric acid. Two distinct methods of DNA determination have emerged. In one procedure,226 cysteine and DNA are allowed to react in the presence of concentrated sulphuric acid. This method can be used to cover the range 50 to 500 pg of DNA or 10 to 100 pg by B r ~ d y ' s ~ ~ ~ modification. This reagent produces coloured products with a variety of carbohydrates, but protein does not interfere.l*O The second procedure, involving the use of 75 per cent. sulphuric acid,280 has been adapted by S t ~ m p f ~ ~ ~ for assaying DNA in the range 25 to 550 pg.Amino acids, proteins and most carbohydrates do not interfere,lS0 and this is presumably why Juni, Kamen, Reiner and S~iegelmanl~~ were able to apply this reaction to the DNA fraction of an alkaline digest of yeast that could not be examined by the diphenylamine reaction on account of interference. Other methods for measuring deoxyribose have been applied to determining DNA. Webb and Levy15 used the relatively specific reaction between deoxyribose and $-nitro- phenylhydrazine to measure DNA over the range 10 to 300 pg. It has not apparently been used by other investigators. A highly sensitive and specific fluorimetric procedure capable of measuring 0.002 pg of DNA has been described by Kissane and Robins284; it depends on the fluorescence of the compound formed when 3,5-diaminobenzoic acid reacts with deoxy- ribose.C0hen~7~ has described a procedure involving reaction of DNA with tryptophan in perchloric acid ; this procedure is rather insensitive and is subject to interference by various carbohydrates. In this method, the pigment formed with DNA is extracted into isopentyl alcohol to separate it from the colour formed with protein, but Asimov et aZ.271 observed some protein interference even when this extraction was carried out. von Euler and Hahn218 describe conditions under which phloroglucinol reacts with DNA to give a purple colour that can be used for its assay. Waravdekar and S a s l a ~ ~ ~ ~ propose a method in which deoxy- ribose is first made to react with periodate to give malonaldehyde, which produces a colour with 2-thiobarbituric acid ; the optical density is proportional to the deoxyribose content of the specimen up to 2.5 pug.Finally, the method of Gurin and Hood,224 based on the carbazole reaction,223 and the anthrone method of Gary and Klabsmeie~-232 lack specificityDecember, 1961 J A4CIDS I N BIOLOGICAL MATERIALS. A REVIEW 753 for carbohydrates and do not appear to have been applied to DNA measurement in biological materials. In conclusion, it would appear that Burton's261 modification of the diphenylamine reaction and C e r i ~ t t i ' s l ~ ~ indole procedure offer the most suitable general methods of measuring DNA without serious interference. The latter procedure is the more tedious, on account of the three extractions with chloroform, but provides greater sensitivity.The other methods, notably the cysteine reaction involving 75 per cent. sulphuric acid, the method of Webb ard Levy15 and the fluorimetric procedure,*E4 may possess advantages of specificity and sensitivity in special circumstances. Determination by zdtra-violet absov$tio?z-- Just as with the Kic'A fraction, the purice and pyrimidine bases of the DNA fraction can be determined by their strong ultra-violet absorp- tion. Directly measuring the ultra-violet absorption of the fraction dissolved in alkali will give erroneously high readings because of the presence of tissue protein, which also absorbs in the ultra-violet region. However, several authors5 3128J75 have reduced the error from this source by taking readings at two wavelengths.This procedure will not completely eliminate the absorption due to protein unless the wavelengths chosen give identical readings for protein and different readings for DNA, but the conditions for obtaining this do not appear to have been established. An alternative procedure is to extract the DNA fraction with hot TCA17 9136 9253,286 or hot PCA23,47 , 7 3 9 , 2 1 7 72513287 and read the ultra-violet absorption of the extract. Hot PCA is usually preferred for this to TC-4 because of the latter's ultra-violet absorption. McIntire and Sproull79 extracted the DNA with 0.1 N sulphuric acid in 10 per cent. sodium chloride. Scott, Fraccastoro and Taft73 studied the conditions for extracting DNA by hot PCA and could find none under which the DNA was removed quantitatively without the extraction also of some ultra-violet absorbing amino acid material, and they recommend conditions that are a compromise.Extraction of amino acids by too vigorous use of hot PCA was also noted by Gardella and L i ~ h t l e r . ~ ~ ~ Minagawa and Straussso and Tsanev and Markov47 have sought to overcome this difficulty by taking readings at two wavelengths in the ultra-violet region; the latter group of authors chose their two wavelengths on the basis of peptide material isolated from the RNA fraction of the digest, but this ma). not be representative of the protein of the DNA fraction. On the whole, the errors of measuring the DNA content of TCA or PCA extracts by their ultra-violet absorption a t 260 or 268 In;,L cannot usually be large, since several authors17 923 9253 5254 have reported reasonable agreement between this method and other procedures for determining DNA content.Determination by qidantitative measurement of individ.ual bases-Like the KNA fraction, the DNA fraction of the alkaline digest can be digested with 72 per cent. YCA at 100" C for 1 howl2 to obtain the free bases, which can then be separated chromatographically. Conditions for quantitative PCA hydrolysis of DNA have been explored by Emanuel and Chaikoff.2*8 This has been used to measure the amount of DNA in liver134 and in bacteria,123 the latter group of investigators haviRg been able to account for 95 per cent. of the phosphorus of the DNA fraction by recovery of the bases.Kleinschmidt and X ~ ~ t h e y ~ ~ have preferred to use trifluoroacetic acid289 to obtain the free bases from the DXA fraction in their assaJ- procedure, because it is more effective in liberating the bases and does not char the chromato- graphy paper. Stuy201 treated the DNA fraction of bacteria successively with 0.1 N hydro- chloric acid, trifluoroacetic acid and PCA in order to isolate the bases for paper chromatography. The recovery of the bases was in good agreement with the amount of DSA indicated by the diphenylarnine reaction. The use of phosphorus pentoxide for hydrolysing IjNA to bases, proposed by Narurkar and Sahasrabudhe,290 does not appear to have been applied to analysis of the DNA fraction from the Schmidt - Thannhauser procedure.A method based on chromato- graphic separation of thymidj7lic acid after treatment of the DNA fraction with N hydrochloric acid for 1 hour at 90" C has been To obtain the deoxyribonucleotides, deoxy- ribonuclease and phosphodiesterase have been allowed to attack the DNA fraction ,137 though this procedure seems not to have been used as the basis of any quantitative method for DNA. Finally, several methods of measuring thymine specifically have been applied to the DNA fraction from the Schmidt - Thannhauser procedure. reports an isotope- dilution method by adding labelled adenine and guanine to the DNA fraction, which is then hydrolysed to yield the free purines; these are isolated by silver precipitation, and the dilution of the isotope is measured. Marshak and Marshak71 describe a similar procedure in which 14C-labelled thymine is added after digestion of the DXA fraction with 73 per cent.704 HUTCHISON AND MUNRO THE DETERMINATION OF NUCLEIC [Vol. 86 PCA, the mixture being then purified by paper chromatography.Thymine can be deter- mined on the DNA fraction by microbiological assay292; a recent form of assay can detect 0.001 to 0.1 pg of t h ~ m i d i n e . ~ ~ ~ A high degree of sensitivity has also been obtained with a fluorimetric procedure based on opening of the thymine ring and condensation to give a fluorescent product2=; the application of this assay to the DNA fraction of various tissues gave results similar to those obtained by diphenylamine, phosphorus or ultra-violet measure- ments. All of these procedures for determining DNA by recovery of bases are technically more complicated than the commoner ones.RECOMMENDATIONS FOR THE USE OF THE SCHMIDT - THANNHAUSER METHOD- Difficulties can arise at every stage in the Schmidt - Thannhauser procedure for deter- mining nucleic acids. The following recommendations may help to circumvent the major hazards. (a) Preliminary treatment: it is essential to avoid degrading the nucleic acids during the preliminary removal of acid-soluble compounds and subsequent extraction of lipids. Degradation can occur through exposure to high degrees of acidity or, at lower levels of acidity, through a rise in temperature. For this reason, TCA is a safer protein precipitant than PCA for removal of acid-soluble tissue constituents. Similarly, if heat is used during extraction of lipids from the tissue, degradation of DNA can occur because of acid carried over into the lipid solvents.This can be prevented by buffering the first lipid solvent (usually ethanol) with sodium acetate56 or alternatively by using lipid solvents without heat. If precautions against degradation of DNA are not taken, apurinic acid may form and subsequently appear in the RNA fraction after alkaline digestion. (b) Alkaline digestion: there appears to be no justification for using the 15-hour period of incubation with N alkali originally recommended by Schmidt and Thannhauser.9 A 1-hour period of digestion in N alkali at 22" C73 or in 0.3 N alkali a t 37" C38 has been successfully used on various tissues for extracting RNA in a form no longer precipitable on acidification of the digest. The 1-hour period of alkaline digestion has the advantage over longer periods of digestion that little of the tissue protein becomes acid-soluble, and thus the RNA contained in the acid-soluble fraction of the digest can be accurately determined by ultra-violet absorp- tion.The adequacy of the 1-hour period of digestion in liberating all the RNA from the tissue can be verified by carrying out orcinol and phosphorus measurements on the RNA fraction and phosphorus determinations on the DNA fraction after different periods of alkaline digestion. It is also wise to ensure that the DNA has been fully precipitated by acidification at the end of incubation. This can be done by testing the RNA (acid-soluble) fraction for DNA, for example by applying the CeriottP indole procedure for deoxypentose, which is highly sensitive.If any deoxypentose is detected in the RNA fraction, then the earlier stages in the determination should be reviewed for possible degradation of DNA to apurinic acid. Finally, it is unwise to ignore portions of tissue that resist digestion in alkali. These should be separated from the digest and their significance assessed by determining the amount of phosphorus and deoxypentose directly on the sediment and by making a hot PCA extract on which ultra-violet absorption can be examined a t several wavelengths. (c) Determination of RNA: on account of the presence of appreciable amounts of non-RNA phosphorus in the acid-soluble fraction of most tissues, determination of phosphorus on this fraction will give values commonly 15 to 20 per cent.more than the RNA phosphorus content and sometimes considerably higher. An adequate estimate of the amount of RNA present can sometimes be obtained by ribose determination, but a convenient procedure with a considerable degree of precision is to measure ultra-violet absorption at 260mp after a 1-hour period of digestion in 0.3 N alkali at 37" C or N alkali at 22" C. A simple protein determination (e.g., Lowry et a1.294) will demonstrate whether the amount of protein present in the RNA fraction is small enough to be ignored as a source of ultra-violet absorption; Fleck and M u n r ~ ~ ~ separated the protein-degradation products from the acid-soluble fraction and found that 1 pg per ml contributed about 0.0008 to the optical density at 260 mp.The purity of the RNA fraction for ultra-violet absorption measurements can be further checked by examining the ultra-violet spectrum and comparing it with the spectrum of RNA, preferably of the RNA isolated from the tissue under consideration. If these procedures still leaveDecember, 19611 ACIDS IN BIOLOGICAL MATERIALS. A REVIEW 796 doubts about the accuracy of the ultra-violet absorption measurements for determining RNA, it may be necessary to isolate the individual bases or nucleotides from the acid-soluble fraction. This can be done with least peptide contamination by making the 1-hour acid- soluble fraction alkaline again and continuing digestion for 18 hours, the mononucleotides then being isolated by ionophoresis and the individual nucleotides determined by phosphorus recovery.Finally, it is prudent to make certain that the RNA has been fully extracted from the tissue by the 1-hour period of alkaline digestion. This can conveniently be done by digesting samples of the tissue for 18 hours and then determining the phosphorus and pentose in the acid-soluble fraction. If the values are similar to those obtained after 1 hour’s digestion in alkali, it is unlikely that further RNA has been released by prolonging the period of alkaline digestion. (d) Determination of DNA : for this, determinations of phosphorus and deoxypentose will usually give reliable figures for the amount of DNA present. For the determination of deoxypentose, Burton’s261 modification of the diphenylamine reaction and CeriottiYsla indole procedure are satisfactory and relatively simple to carry out ; Burton’s procedure is technically easier, but less sensitive.The determinations should be performed directly on the DNA fraction dissolved in alkali. The practice of extracting the DNA fraction with hot TCA or PCA (SchneiderYsl7l modification of the Schmidt - Thannhauser procedure) can lead to some- what low values for DNA; ultra-violet measurements on the extract are subject to errors resulting from extraction of aromatic amino acids. Tissue Cold acid extraction TCA three times) er cent. Acid-soluble fraction Lipid solvents:- Ethanol Ethanol -chloroform (3+ I ) twice Ethanol -ether (3+/) Ether Lipid fraction Alkaline digestion (0.3 N alkali for I hour at 37OC) I Alkali -insoluble material $if present) Acidification I I PCA extraction I Phosihorus 7 - - - - - 1 Dedxy- I - _ - - _ - - - I--- ( N PCA at 7OoC pentose Acid-soluble fraction Precipitate for 20 minutes) Dissolve in i - I j 0.1 N alkali U.V.at 260 mp I (containing RNA) (containing DNA) I I I ____. I I I I I I I I U.V. spectrum I Deoxypentose U.V. I spectrum I I I I 1 I Phosphorus _ - _ _ _ _ _ - T - - - L _ - - - - ~ I I I I I Deoxypentose Protein Qrcinol and phosphorus determination after I hour and 18 hours’ alkaline digestion Fig. 4. A modified form of the Schmidt - Thannhauser procedure (full lines represent routine method ; broken lines represent recommended check procedures t o be carried out initially)796 HUTCHISON AND MUNRO : THE DETERMINATION OF NLJCLEIC [Vol.86 In order to verify that there are no substances in the DNA fraction interfering with deoxypentose or phosphorus determination of DNA, it is sometimes convenient, for tissues in which nuclei can be separated from the cytoplasm, to prepare the "DNA" fraction from the cytoplasm and check that it contains no phosphorus and does not react positively with deoxypentose reagent s . ~ O These recommended modifications of the Schmidt - Thannhauser procedure are shown schematically in Fig. 4. 2. THE SCHNEIDER PROCEDURE In Schneider'slO original procedure for nucleic acid (Fig. 5), the tissue is first extracted with cold acid and with lipid solvents as in the Schmidt - Thannhauser procedure, but there- after the nucleic acids are simultaneously extracted from the tissue with 5 per cent.TCA at 90" C. Schneider used the orcinol reaction to measure the amount of RNA in the extract and the diphenylamine or carbazole reaction to measure the DNA content. In a later modification, Schneider, Hogeboom and Ross29 used PCA at 90" C to extract the nucleic acids. Many authors have applied either the TCA or the PCA procedure to nucleic acid deter- mination in various biological materials. In so doing, the conditions of extraction originally proposed by Schneider have frequently been varied. In addition, some investigators have measured the total extracted nucleic acids by the ultra-violet absorption of the extract; in order to obtain the individual amounts of RNA and DNA present, various methods have been applied to the extract.Each of these aspects of the Schneider procedure will now be considered in turn. Tissue Cold add extraction Acid-sol u b le fraction Lip/d solvents I Lipid fraction Hot acid extraction Acid extract containing RNA and DNA Residue Fig. 5. The Schneider procedure for determination of RNA and DNA in tissues THE EFFICIENCY OF EXTRACTION WITH TCA AND PCA- In the original SchneiderlO procedure, the tissue residue was extracted for 15 minutes with 5 per cent. TCA at 90" C; the extracted residue was then washed once with cold 5 per cent. TCA, and the washing was added to the hot extract. Subsequent users of the TCA extraction method have frequently altered these conditions. Some have reduced the con- centration of TCA to 3 per cent.295 or raised it to 5+lZg6 or 7.5 per ~ent.1~7 The extraction has been carried out at 100" C,124,196~197~2g7,298 and the duration of extraction has ranged from 10295 to 201979299 y3Oo and 30 minutes.lg6 Also, several a u t h o r ~ ~ ~ 0 ~ 3 0 ~ p 3 0 2 ,3039304 have thought it necessary to carry out more than one extraction with hot TCA.In consequence, con- ditions have ranged from one 10 minutes' extraction with 3 per cent. TCA at 90" C295 to 20 minutes' extraction with 7.5 per cent. TCA at 100" C.197 In their original procedure, Schneider, Hogeboom and Rosszg extracted the tissue residue once with 6 per cent. (1 N) PCA at 90" C for 15 minutes. The concentration of PCA used by some other workers has varied from 3 per cent. (0.5 N)75,261 ,3059306 y 3 0 7 3308 y309 p 3 l o to 5 (0.8 N) ,217,311 9 (1.5 N ) ~ ~ and even 10 per cent. (1.6 N)234330293139314 Many users of the procedure have reduced The technique for extraction with hot PCA has been equally varied.December, 19611 ACIDS IN BIOLOGICAL MATERIALS.A REVIEW 797 the temperature of extraction to 70" C,75W J05,307,308 ,310,315,316 but 80" C234,302,312 ,3139314 and 95" CaOS have also been used. The time of extraction has commonly been extended to 20 rninutes,751306,3*7,309,310,315,316 but 30234 and 50 minutes308 have also been used. Finally, with hot PCA. Insufficient work has been done to determine whether these variations in the conditions of extraction are important. In his original publication, SchneiderlO examined the extraction of RNA and DNA from specimens of liver with 5 per cent.TCA a t 90" C and concluded that periods over 10 minutes were sufficient for maximum extraction. When he varied the concentration of TCA from 0 to 10 per cent., he found that concentrations of 3.4 per cent. upwards gave maximum yields. Hutchison, Downie and Munro30 studied the efficiency of extracting RNA and DNA with hot PCA from liver and spleen. They used two tem- peratures that have been commonly employed for PCA extraction, the original 90" C of Schneider, Hogeboom and Ross29 and also 70" C75,261,305,307 ,308,310s315 ,316 and measured the extracted RNA by the orcinol reaction202 and DNA by Ceriotti's indole reaction.l= The results obtained on specimens of rat liver are shown in Fig. 6 as percentages of the RNA and DNA values found when the same sugar reactions were applied to the RNA and DNA fractions prepared by the Schmidt - Thannhauser method.Similar results were obtained many authors75,261 ,302,305,306 ,307,310,312 ,313,314,315,317 have carried out more than one extraction 01 I I t 0 I -0 2.0 3.0 Normality of PCA 0 Fig. 6. Effect of variation in concentration of PCA used for extracting nucleic acids from rat liver tissue resi- dues a t 70" and 90" C: curve A, RNA (at 70°C); curve B, DNA (at 70" C) ; curve C, DNA (at 90" C). Two extractions each of 20 minutes' duration were carried out a t every con- centration of PCA, and the orcinol and Ceriotti reactions, respectively, were used for determining RNA and DNA in the extract. The values obtained are plotted as percentages of the value obtained by the Schmidt - Thannhauser method.(Modified from Hutchison, Downie and Munro*o) with specimens of rat spleen. At both temperatures of extraction, the RNA was fully removed from the tissue a t low concentrations of PCA, and further increments in acid con- centration led to the appearance of additional small amounts of orcinol-reacting material. On the other hand, the apparent DNA content of the tissue extracts prepared at 90" C reached798 HUTCHISON AND MUNRO : THE DETERMINATION OF NUCLEIC [Vol. 86 a maximum value with 0.5 N PCA and thereafter diminished rapidly with increasing concen- trations of PCA; at all concentrations of PCA, less DNA was found in the 90" C extracts than by applying the same colour reaction to the DNA fraction from the Schmidt - Thann- hauser procedure.When the tissue was extracted with PCA at 70" C, the DNA content found was close to the value obtained by the Schmidt - Thannhauser procedure between 1 and 2 N PCA, but diminished at higher concentrations. With 0.5 N PCA, which has been frequently used to extract tissues at 70" CJ75930593079310 the amount of DNA obtained was 25 per cent. lower than the value by the Schmidt - Thannhauser method. Scrutiny of the published literature shows that several other workers have found the conditions for extracting DNA with hot acid to be critical. Chiba and Sugahara31s studied extraction of nucleic acids from plant particles by heating in PCA at 70" C for 30 minutes and observed that, although 3 per cent. (0.5 N) PCA was adequate for removal of the RNA, 6 per cent.(1 N) PCA was needed for extracting the DNA. In contrast, Burton261 examined the efficiency of extraction of DNA from bacteria by PCA at 70" C and found that two 20- minute extractions with 3 per cent. (0.5 N) PCA removed 96 per cent. of the total DNA that could be obtained by four extractions, whereas with 6 per cent. (1 N) PCA the yield was reduced to 86 per cent. The effect of temperature on DNA destruction shown in Fig. 6 is confirmed by the observations of Deken-Grenson and Deke11,~~7 quoted in an addendum to their paper. When samples of DNA were heated in 5 per cent. (0-8 N) PCA for 15 minutes, the values obtained by the indole and diphenylamine reactions were increased by 10 per cent. if the temperature of extraction was reduced from 90" to 70" C.It is apparent from these findings and those illustrated in Fig. 6 that extraction at 90" C with PCA inevitably leads to low results. Besides temperature and concentration of acid, the duration of extraction can influence the result. Hirtz and F a y e P extracted DNA from epithelial tissues with 5 per cent. TCA at 90" C and obtained increasing yields as extraction time was prolonged up to 60 minutes, but thereafter the values declined. Bakay, Kirschner and Toennies281 observed a similar effect when preparations of deoxyribonucleoprotein were extracted with TCA at 100" C for increasing lengths of time. These authors also found that, when specimens of RNA and DNA were heated in TCA for varying lengths of time, the deoxypentose values diminished steadily, whereas the ribose values were slightly increased.Destruction of deoxyribose also occurs with continued heating in low concentrations of PCA. Burton261 heated samples of DNA in 3 per cent. (0.5 N) PCA at 70" C and observed a 7.5 per cent. diminution in deoxyribose content after 30 minutes and a 14 per cent. reduction after 60 minutes. Heating with 5 per cent. TCA at 90" C for these lengths of time had similar though slightly less marked effects on colour formation. The more facile degradation of deoxyribose by acid has also been noted by investigators preparing ribose and deoxyribose from nucleic acids for chromatographic isolation.319 It is apparent from these findings that two factors operate when hot acid is used t o extract DNA from tissues: at low temperatures and low concentrations of acid, DNA may be incompletely extracted, whereas at higher temperatures and concentrations, significant destruction of deoxyribose occurs.These factors do not appear to affect the determination of RNA by ribose measurements; the RNA is readily extracted from the tissue, and the sugar remains stable to acid treatment. Besides concentration of acid, temperature and duration of extraction, other factors influence the recovery of DNA by hot acid extraction. Hutchison, Downie and Munro30 observed that tissues differed widely in the extractability of their DNA by 0-5 N PCA at 70" C. Lindigkeit and Rap~port~~O claimed that the extraction of DNA from liver with hot TCA could be reduced by addition of red cells to the tissue, but Hutchison, Downie and Munro30 were unable to confirm this observation with added blood.Hermann and Speck321 obtained lower recoveries of DNA from tissues fixed in chromate, and it has been 0bserved3~29~2~ J3*' that the extractability of nucleic acids from histological sections by means of hydrochloric acid, PCA or TCA depends on the nature of the tissue and the histo- logical fixative as well as on conditions of acidity and the temperature of extraction. It is thus apparent that the conditions for optimum extraction of nucleic acids from tissues will vary with the nature and treatment of the material and cannot be predicted. DETERMINATION OF NUCLEIC ACIDS IN THE EXTRACT- The total nucleic acid content of the extract has been assessed by phosphorus deter- but most commonly by ultra-violet minationlo and by copper precipitation of purineDecember, 19611 ACIDS I N BIOLOGICAL MATERIALS.A REVIEW 799 absorption m e a s u r e m e n t ~ . ~ ~ , ~ ~ ,216,326,3273328 It has been claimed that ultra-violet methods can be used even with TCA extracts, in spite of the known ultra-violet absorption of this extractant. Di Carlo and S c h ~ l t z ~ ~ ~ and Waterlow and Weisz216 state that, in their procedures, the TCA is so diluted that it has no significant absorption at 260 mp. Logan, Mannell and Rossiterl7 used a suitable TCA blank; Bieber, Spence and Hit~hings~~8 extracted the TCA with ether before making ultra-violet measurements. When the total nucleic acid content of the acid extract is measured by ultra-violet absorption, it is necessary to treat the standard in the same manner, since both nucleic acids show a.n increment in absorption at 260 mp (hyperchromic effect) when heated in acid.17 ,2369329 It should also be remembered that protein- degradation products extracted by the hot acid can contribute to the ultra-violet absorption of the extract.Schneiderlo,Bo himself noted that the nitrogen content of TCA tissue extracts was consistently higher than their nucleic acid content indicated, and extraction of protein- degradation products has been noted by authors who used hot TCA234y288,331 or hot PCA23QW as the extractant. Logan, Mannell and Rossiter17 did not obtain evidence of protein-degrada- tion products in the TCA extracts of nervous tissue until heating had been prolonged. On the other hand, considerable amounts of ultra-violet absorbing protein break-down products were extracted when 6 per cent.(1 N) PCA was substituted for 5 per cent. TCA. For the determination of individual amounts of RNA and DNA in the extract, various colorimetric reactions have been used, chiefly orcinol for RNA and diphenylamine or indole for DNA. The merits of these individual reactions have already been discussed, and here it is only necessary to indicate sources of interference peculiar to the Schneider method. In his original procedure, SchneiderlO pointed out that DNA reacts with orcinol and that in consequence a correction has to be applied to the determinations with orcinol in order to obtain the true RNA value of the extract. Schneider found that DNA gave 12 per cent.of the colour formed by the same weight of RNA, and this was also observed by von Euler and Hahn,210 PriceSo1 and Hutchison, Downie and M~nro.~O Paigen and Kaufmann124 obtained a figure of 19 per cent. for liver DNA, but Steele et obtained only 2.5 per cent. by their micro method, and Smillie and K r ~ t k o v ~ ~ obtained a colour equivalent to only 0.3 per cent. of that of RNA when they used Markham's modification of the orcinol procedure. The presence of materials other than DNA in the hot-acid extract can also lead to errors with the orcinol reaction. With TCA extracts of human liver, Waterlow and Weisz216 obtained erroneously high orcinol values because of extracted glycogen. Orcinol-reacting contaminants have been observed in TCA extracts of bacterialg7 and in PCA extracts of Chlorella.32.In a survey of animal and plant tissues and bacteria, Deken-Grenson and Deken217 found that the orcinol values obtained on PCA extracts tended to be erroneously high, especially for plants. These high values were presumably due to carbohydrates other than ribose in the extract. Measurement of the DNA content of the extract has usually been carried out by the diphenylamine reaction, though the carbazole and indole procedures are also used. Sub- stances that interfere with the diphenylamine reaction have been frequently encountered in hot acid extracts of tissues. Hot TCA extracts of amphibian eggs were found by FinamoreB3 to contain a substance, apparently an octo- peptide, that increased the colour produced in the diphenylamine reaction. With certain plant materials, the diphenylamine reaction applied to hot PCA extracts has been found to give erroneously high results unless preliminary extraction of the tissue with light petroleum was carried out.334 On the other hand, Newton and Wildy310 found that the intensity of the diphenylamine reaction with PCA extracts of tissue culture cells was not dependent on prior removal of lipids.The colour given by diphenylamine with hot TCA extracts of serurn~96,337 and of bovine t0nsi1~~0 is apparently due to release of mannose from glycoproteins present in the original extract; reaction with glycoproteins has long been recognised as a source of error in the diphenylamine reaction.a8 On most other occasions the identity of the interfering material has not been ascertained. Potter, Recknagel and H ~ r l b e r t ~ ~ ~ noted that PCA extracts of tissues contained unidentified substances that gave spurious colours with diphenyl- amine, and Schneiderl8l confirmed this on extracts made from liver samples. Deken-Grenson and Deken217 found that PCA extracts of various plant and animal materials gave higher DNA values by the diphenylamine than by the indole reaction.Logan, Mannell and Rossiterl7 obtained erroneously high readings for DNA when the diphenylamine reaction was applied to hot TCA extracts of nervous tissue, although this method gave satis- factory values when used on the DNA fraction prepared from the same tissue by the Only a few of these have been identified.800 HUTCHISON AND MUNRO: THE DETERMINATION OF NUCLEIC [Vol. 86 Schmidt - Thannhauser procedure.Substances interfering with the diphenylamine reaction for DNA have also been observed in hot acid extracts of ba~terial~79~53 and of fungi.80 The indole reaction133 can also be used to measure the DNA content of the extract; Ceriotti39 observed that TCA, but not PCA, inhibited the reaction with DNA. On the other hand, Waterlow and Weisz216 found TCA to be without effect; they found, however, that the intensity of colour formation decreased when tissue extracts made with PCA were stored for any length of time, presumably owing to destruction of deoxyribose. This effect of storage in PCA on DNA was also observed by Deken-Grenson and Deken.217 These authors examined the DNA content of various tissues by the Schneider PCA, the Schmidt - Thann- hauser and the Ogur - Rosen methods of extraction.Good agreement was obtained between the Schneider and Schmidt - Thannhauser procedures when the indole reaction was used for DNA determination, but the diphenylamine method gave high values when applied to the Schneider PCA extract. Unfortunately their extraction procedure was subsequently found to be unreliable (see addendum to their paper). Application of the Ceriotti procedure to hot acid extracts of 0V7818893287340 has led to higher values for DNA content than those obtained by isotope dilution of thymine or microbiological assay. Finally, to counterbalance these occasions when the assay of RNA or DNA in hot acid extracts was found to be in error, there are many records in the literature of investigators who obtained reasonable agreement between the Schneider and some other method of nucleic acid determination, generally that of Schmidt - Thannhauser.Schneiderl'l himself compared his method with a slightly modified Schmidt - Thannhauser procedure and found satisfactory agreement for a range of mammalian tissues. Agreement between the two methods has also been claimed for liver,31 sN1 pN2 brain,342 reticulocytes,w calf thymus,= ascites tumour cells,w isolated nuclei,128 leaves37 and b a ~ t e r i a . ~ ~ ~ ~ ~ ~ For placenta, Schneider's method failed to agree with that of Schmidt - Thannhauser, but gave values similar to those obtained by Ham- marsten's met hod.2999346 RECOMMENDATIONS FOR THE USE OF THE SCHNEIDER PROCEDURE- The Schneider procedure has proved attractive to many workers because the results are more rapidly obtained than are those by the Schmidt - Thannhauser method and because fewer manipulations are involved. The former advantage is probably no longer valid if the short period of alkaline digestion recommended earlier here is used in the Schmidt - Thann- hauser procedure.Against the relative simplicity of the Schneider procedure must be placed the sources of error listed in detail above. First, there is now irresistible evidence that the Schneider extraction procedure can result in both incomplete extraction of DNA and destruction of deoxyribose. From Fig. 6 it can be seen that conditions can be chosen under which extraction is relatively complete and destruction is minimal when PCA at 70" C is the extractant, but scrutiny of the literature has shown that the conditions required for complete recovery of DNA vary from one tissue to another, so that general recommendations about hot acid extraction cannot be given with confidence.Thus Hutchison, Downie and Munro30 observed in one of their experiments (see Fig. 6) that 25 per cent. of the DNA of liver remained in the tissue after two 20-minute treatments with 3 per cent. (0.5 N) PCA at 70" C, whereas only 3 per cent. of the total DNA was not recovered in the extract when 10 per cent. ( 1 . 6 ~ ) PCA was used. By contrast, Burton261 obtained 96 per cent. of the total extractable DNA by treating bacteria twice with 3 per cent. (0.5 N) PCA at 70" C for 20 minutes, but only 86 per cent.when 6 per cent. (1 N) PCA was used as extractant. It is thus a matter for the analyst to establish, by comparison with some other procedure, such as the Schmidt - Thannhauser method, that his conditions for extraction provide adequate recovery of DNA. In this connection, it is apparent (Fig. 6) that with PCA as the extractant it is best to keep the temperature of extraction low. Secondly, sources of error in determining the nucleic acids present in the extract have been observed rather frequently. The total nucleic acid content is conveniently deter- mined by ultra-violet absorption, provided that the extract does not contain significant amounts of protein-degradation products. I t is best to reassure oneself on this point by examining the ultra-violet spectrum of the extract to see whether absorption due to the presence of protein can be detected; a testzg4 for protein and its degradation products can also be carried out.The determination of RNA in the extract by the orcinol procedure has sometimes given erroneously high values. This may be avoided31 by determining the total nucleic acid content of the extract by ultra-violet absorption and subtracting the value foundDecember, 1961 J ACIDS I N BIOLOGICAL MATERIALS. A REVIEW 801 for its DNA content by a colorimetric procedure. Several investigators have observed that measurement of the DNA content of the extract by the diphenylamine reaction gives too high values for some materials. On the basis of results obtained by Deken-Grenson and Deken217 for a variety of materials, it is possible that Ceriotti's indole procedure may provide more reliable measurements of the DNA content of hot acid extracts.3. THE PROCEDURE OF OGUR AND ROSEN This method was originally proposed by Ogur and Rosen in 194gX7 for determining small amounts of nucleic acids in plant materials. The principle of the technique depends on preferential solubilisation of RNA by cold PCA and extraction of DNA with hot PCA. The nucleic acid present in each extract is then measured by its ultra-violet absorption. As fully described16 for use on plant tissues, the procedure (see Fig. 7) consists in first extracting the tissue with lipid solvents, the acid-soluble small molecules being then removed by brief treatment with cold 1 per cent. (0.2 N) PCA. The residue is exposed to 6 per cent.(1 N) PCA for 18 hours at 4" C, a treatment claimed to take out all the RNA. The DNA is subsequently removed by two 20-minute extractions at 70" C with 3 per cent. (0.5 N) PCA. For animal tissues Ogur and Rosen16 recommend extraction with 6 per cent. (1 N) PCA at 80" C for two 30-minute periods in order to ensure complete removal of DNA. I Lipid fraction Cold 0.2 N PCA extraction Acid-soluble fraction Extraction with 1 N PCA for I8 hours at 4O C RNA Extraction with 0.5 N PCA for 20 minutes twice at 70° C (plant tissue), or with I N PCA for 30 minutes twice at 8OoC (animal tissue) DNA Residue Fig. 7. The Ogur - Rosen procedure for determination of RNA and DNA in tissues Ogur and Rosenl* examined the adequacy of their procedure for separating the two nucleic acids in samples of rabbit liver.Ultra-violet measurement of the amount of RNA extracted by cold PCA and of DNA removed by hot PCA were in excellent agreement with the amounts obtained by applying the orcinol and diphenylamine reactions, respectively, to the same extracts. The values also agreed with those for the liver specimens by Schneider's TCA extraction procedure. In a later study of plant buds, in which 10 per cent. (1.6 N) PCA was used for 18 hours at 4" C to extract the RNA and 10 per cent. PCA-at 80" C for 20 minutes to remove the DNA, Ogur and his colleagues= again observed good agreement between the ultra-violet absorption of the DNA extract and its content of DNA measured by the diphenyl- amine reaction. Satisfactory results were also obtained by Holmes, Mee, Hornsey and Graya8 when they compared the Ogur - Rosen and Schmidt - Thannhauser procedures in the analysis of plant root tips.802 HUTCHISON AND MUNRO: THE DETERMINATION OF NUCLEIC [Vol.86 Few other investigators have found the Ogur - Rosen procedure to be satisfactory for quantitative separation of RNA from DNA. Two sources of error have been encountered: first, a number of workers have observed that the cold PCA extraction is inadequate for removing all the RNA from the material; conversely, a few investigators have observed that part of the DNA is extracted into the cold PCA along with the RNA. The evidence for each of these will now be considered. Many authors have found that RNA is not completely extracted by cold PCA under the conditions laid down by Ogur and Rosen, and in consequence this unextracted RNA appears in the DNA fraction as ultra-violet absorbing material.This difficulty has been repeatedly encountered in analysis of plant material. Exposure of tobacco-leaf preparations to cold PCA for 18 hours was not effective in removing the RNA completely from the material,Z15 a finding confirmed by identifying uracil in the DNA fraction.as In a study of the conditions suitable for extracting RNA from tobacco-leaf fibre and chloroplasts, H0lden~~0 failed to achieve complete removal of RNA by treatment with 6 per cent. (1 N) PCA for 18 hours at 4" C, although most of the RNA could be removed by raising the temperature of extraction to 16" C. exposure to cold 6 per cent. (1 N) PCA for 30 hours was found to leave considerable amounts of unextracted RNA in the residue, and Ts'o and noted that 72 hours' treatment with cold 6 per cent.(1 N) PCA was necessary for removing all the RNA from certain cell fractions isolated from pea seedlings. Failure to extract all the RNA from pea seedlings in 20 hours was also suspected by Stafford,214 who found more ultra-violet absorbing material in the subsequent hot PCA extract than could be accounted for by the amounts of DNA revealed by the diphenylamine reaction. From microsomes of beet petioles Martin and Morton279 were able to extract only about half the RNA with cold 6 per cent. (1 N) PCA in 30 hours. and Smillie and K r ~ t k o v ~ ~ observed the presence of significant amounts of RNA in the DNA fraction after samples of the organism had been treated with 6 per cent.(1 N) PCA for 24 hours at 4" C. Difficulties in applying the Ogur - Rosen procedure to Neurosporaso and to yea~t217-3~~ have also been reported. Two w o r k e r ~ ~ ~ J ~ ~ have observed that some 40 to 44 hours' contact with cold PCA were needed to extract all the RNA from certain bacteria, and Deken-Grenson and Deken217 also noted that the standard 18-hour period was inadequate to remove the RNA completely from Bacterium megatherizcm, though it appears to have been successful with Bacillus sabtilis. Similar evidence for incomplete extraction of RNA under the conditions recommended by Ogur and RosenlG has been obtained in several well documented studies made on animal tissues. observed with chicken liver that 6 per cent.(1 N) PCA removed only 64 per cent. of the total RNA in the tissue after 18 hours at 4" C and some 78 per cent. after 36 hours of contact; the unextracted RNA appeared in the DNA fraction removed with hot PCA. Greater ultra-violet absorption by the hot PCA extract than could be accounted for by its deoxyribose content was also observed by Deken-Grenson and Deken217 when they applied the Ogur - Rosen procedure to rat liver. Cold PCA is also ineffective in removing all the RNA from isolated cytoplasmic fractions of the liver the remaining RNA was extracted with hot PCA and identified by sugar reactions and by isolation of its bases. The inadequacy of cold PCA to extract RNA completely from liver preparations explains why Badolato and Calabrese126 found the RNA - DNA ratio of rat liver to be 1.3 by this method of analysis, whereas other methods of analysis give a ratio of about 3 ; Hadjiolov 356 also noted that analysis of rat liver by the Ogur - Rosen procedure indicated a smaller RNA content and a larger DNA content than those recorded by other authors using different analytical procedures. On the other hand, Seifter, Muntwyler and Harkness314 observed good agreement between RNA determinations made on liver samples by the Ogur - Rosen and the Schneider TCA methods, and Rose and S~hweigert~~7 claim satisfactory extraction of RNA from spleen, liver and kidney by a 24-hour period of treatment with cold 9 per cent.(1.5 N) PCA. The Ogur - Rosen procedure has proved inadequate to extract all the RNA from embryos and hens' eggs in the hands of two independent investigator^,^^^^^^^ who were able to identify the unextracted RNA in the DNA fraction.A considerable part of the RNA of pig-heart sarcosomes and of mammary gland remains unextracted after two 18-hour periods in cold PCA,360 and it has been noted302 that up to 11 per cent. of the RNA in the salivary gland of Drosophila larvae resists extraction with cold PCA under the standard conditions for the Ogur - Rosen procedure. The second criticism of the Ogur - Rosen technique is that some of the DNA in the sample may be solubilised by the cold PCA used in the extraction of RNA. Some authors With pea seedling In Euglena,December, 19611 ACIDS I N BIOLOGICAL MATERIALS. A REVIEW 803 have tested for the presence of deoxyribose in the cold PCA extract.Negative results were obtained for bacteria,= Euglena32 and lymphoid cells.361 Rose and S ~ h w e i g e r t ~ ~ ~ also obtained no diphenylamine-positive material when cold 9 per cent. (1.5 N) PCA was used to extract specimens of liver and kidney, but they were unable to apply this extractant to spleen on account of the loss of DNA into the cold extract. Loss of deoxyribose-reacting material from chick embryo samples into cold PCA was found to represent only 3 per cent. of the total DNA of the Since the initial effect of acid on DNA is to cause loss of purine ba~es,~319~32 examination of the cold PCA extract for deoxyribose may be a relatively insensitive method of detecting DNA break-down. he ye^^^ has used a chromatographic procedure to examine loss of bases when DNA isolated from pea seedling roots is exposed to cold 6 per cent.(1 N) PCA for 18 hours; when the DNA was prepared from the apical region of the root, the cold acid treatment caused a loss of purine bases, whereas treatment of DNA derived from the basal region led to loss of pyrimidine and purine bases and also some phosphorus, indicating disintegration of the DNA chain. Other evidence suggestive of DNA break-down under the influence of cold PCA has been obtained. Loeb and D i ~ k i n s o n ~ ~ ~ found that cold PCA extracted more ultra-violet absorbing material from thymus and tumour cells than could be accounted for by the amount of phosphorus in the extract and concluded that some of the purine bases of DNA had been extracted by the cold acid.Bhargava, Bishop and Work364 found more ultra-violet absorbing material in the cold PCA extract of spermatozoa than could be explained by the amount of ribose present and concluded that about 5 per cent. of the DNA had been extracted by cold PCA. Ogur and his colleagues365 applied the Ogur - Rosen procedure to yeast and found that the values for DNA in this organism were 15 per cent. lower than those obtained by the Schneider PCA extraction technique; they attributed this to loss of DNA into the cold PCA fraction. The frequently reported failure of cold PCA to extract RNA quantitatively has led a number of investigators to raise the temperature of extraction. H0lden~~0 studied conditions for the extraction of RNA from tobacco leaf at different temperatures and could find no conditions of temperature or of PCA concentration under which RNA was extracted completely without solubilising some of the DNA.SteinertS9 extracted embryonic tissues with 5 per cent. (0.8 N) PCA for 20 hours at room temperature in order to achieve complete removal of RNA, but observed that the DNA of the tissue lost appreciable amounts of purine bases under these conditions. Considerable losses of DNA were observed by Olmsted and Villee76 when they attempted to remove RNA from liver cell nuclei by overnight treatment with 1 N PCA at room temperature. On the other hand, Berenbom and Peters366 claim that separation of RNA and DNA can be achieved by extraction at 25" C if the period of action of PCA is kept short; they used three 20-minute treatments with 1 N PCA at 25" C and found that less than 10 per cent.of the RNA in various rat tissues escaped extraction, whereas less than 3 per cent. of the tissue DNA was rendered soluble by the procedure. They sup- ported this claim, based on ribose and deoxyribose determinations, by showing that thymine was absent from the RNA fraction and uracil from the DNA fraction subsequently extracted with hot PCA. The success of Berenbom and Peters's procedure is a little surprising, since Bonar and D ~ g g a n ~ ~ have found that exposure of samples of thymus DNA to concentrations of PCA as low as 0.2 N at room temperature leads to solubilisation of 5 per cent. of the sample in 40 minutes. The Ogur - Rosen procedure has been used successfully for differential extraction of RNA and DNA in the course of cytochemical studies on plants,367 protozoa368 and vertebrate tissues.369 For other material the procedure has proved less effective.In a histochemical study of ba~teria,~70 the extraction time had to be prolonged to 31 hours in order to remove all the RNA. Although Koenig and Stahlecker371 found the Ogur - Rosen procedure satis- factory for histochemical studies on liver, extraction at a higher temperature was needed for complete removal of RNA from nerve cells. Under these conditions, there was little margin of safety between the time needed for extraction of RNA and that needed to remove DNA. This was also noted by Di S t e f a n ~ , ~ ~ ~ who used 1 N PCA at 25" C to extract RNA from fixed sections of rat pancreas.All the tissue RNA was extracted by a 6-minute treat- ment with PCA, but after 9 minutes the DNA began to disintegrate. Edstrom373 could not confirm that all the RNA was extracted in 6 minutes. The extractability of RNA from histological specimens is also influenced by the method of fixati0n.37~ Thus the use of PCA for histochemical purposes has led to the same conclusions as those derived from chemical804 HUTCHISON AND MUNRO : THE DETERMINATION OF NUCLEIC [Vol. 86 analysis of nucleic acids in tissues; extraction with PCA that has proved effective in one set of circumstances may not be applicable in others. COMMENTS ON THE USE OF THE OGUR - ROSEN PROCEDURE- It is apparent that the Ogur - Rosen procedure has seldom proved adequate for deter- mining nucleic acids in biological materials.The most frequent cause for dissatisfaction has been incomplete extraction of RNA by the cold PCA treatment. The efficiency of RNA removal varies from tissue to tissue, and it has been suggested by Martin and Morton279 that the PCA-resistant RNA may be of a different kind. Support for this view comes from examination of the rate of incorporation of radioactive phosphorus by the RNA of mouse embryo and of rat liver; the RNA fraction extractable from these tissues with cold PCA was found to have incorporated 32P less extensively than the RNA that resisted extraction.356 Further, study of the RNA of plant root tips75 has shown that the portion extractable with cold PCA differs in base composition from the non-extractable RNA.This difference in base constituents has also been observed in RNA isolated from amphibian eggs and then immersed in 0-5 N PCA; part of the RNA immediately became acid-soluble, and this material differed in base components from the remainder.lO3 A less commonly reported source of difficulty with the Ogur - Rosen procedure has been partial extraction of DNA by the cold PCA treatment. The extent of this source of error does not appear to have been gross. However, attempts to improve the recovery of RNA during the first stage of the Ogur - Rosen procedure by raising the temperature of extraction with PCA have frequently been defeated because of partial solubilisation of the DNA at the higher temperature. A claim by Berenbom and Peters366 to have obtained satisfactory separation of RNA from DNA by subjecting the tissue to three 20-minute extractions with N PCA at 25" C should be carefully evaluated, since experience obtained with PCA extraction at 4" C shows that tissues differ widely in the resistance of their contained RNA to PCA extract ion.Finally, it should be pointed out that the conditions used by Ogur and Rosen for extract- ing DNA (0.5 N PCA at 70" C for plant material and 1 N PCA at 80" C for animal tissues) are similar to those used in the Schneider hot PCA procedure for simultaneous extraction of both nucleic acids. Consequently, the criticism already made of the Schneider procedure as a method of extracting DNA will also apply to the use by Ogur and Rosen of hot PCA as an extractant of DNA. 4. OTHER PROCEDURES From time to time, procedures other than the three already discussed have been devised for determining nucleic acids in biological material.Most of these have not been thoroughly evaluated, but it is conceivable that some might be of use when the recognised methods of nucleic acid analysis have proved inapplicable. These less commonly used procedures will be considered under four headings: (a) extrac- tion of nucleic acids with salt solutions; (b) other extraction procedures; (c) determination of nucleic acids by isolation of uracil and thymine; and (d) miscellaneous procedures connected with nucleic acid determinations. EXTRACTION OF NUCLEIC ACIDS WITH SALT SOLUTIONS- Several early investigators375 9376 93779378 in the field of nucleic acid studies observed that strong salt solutions could be used to extract the nucleic acids from tissues without undue degradation.The differing solubilities of RNA and DNA in salt solutions were made the basis of a non-quantitative separation procedure379; cold M sodium chloride was used to dissolve deoxyribonucleoprotein, and then the RNA was extracted with boiling 10 per cent. sodium chloride solution, which denatures the protein of the tissue and takes out both RNA and DNA, if present. The usual procedure for extracting nucleic acids with salt solutions is to treat the lipid-free tissue with 10 per cent. sodium chloride solution at 100" C for one hour or longer to obtain the two nucleic acids simultaneously. These can be precipitated from the extract by adding 2 volumes of ethanollO7 or l a n t h a n ~ r n , 3 ~ ~ ~ ~ ~ l especially in the presence of ethano1220 or cupric salts,3S2 or by adjusting the extract to pH l.383s384 The precipitated nucleic acids can then be subjected to analysis for pentose and deoxypentose content,220 separated by the Schmidt - Thannhauser alkaline-digestion p r o c e d ~ r e ~ ~ s ~ ~ s ~ ~ or hydrolysed to provide the bases.380 This method has not been explored on a quantitative basis.December, 19611 ACIDS I N BIOLOGICAL MATERIALS.A REVIEW 805 Although hot sodium chloride extraction has most frequently been used to obtain nucleic acids relatively free from contamination, so that their uptake of radioactive precursors can be examined, it has been employed on several occasions with a view to quantitative measure- ment of nucleic acids in tissues.In an early series of studies on the distribution of RNA and DNA in tissues, Davidson and Waymouth220 extracted the materials with hot 10 per cent. sodium chloride solution, precipitated the nucleic acids with lanthanum in the presence of ethanol and measured the amounts of RNA and DNA by sugar determinations. Davidson385 did not regard this procedure as giving more than an approximate determination of tissue nucleic acid concentrations. However, Ada and Perry46 considered hot 10 per cent. sodium chloride solution to be the best method for removing all the RNA from influenza virus, and Martin and Morton279 also found that 10 per cent. sodium chloride solution, buffered at pH 4 to reduce extraction of tissue contaminants, could remove nucleic acids completely from beet petioles.In both of these studies, extraction of the sodium chloride residue with hot PCA failed to reveal significant amounts of nucleic acids absorbing at 260 mp. Smillie and K r ~ t k o v ~ ~ extracted samples of Euglena with 10 per cent. sodium chloride solution and recovered more than 90 per cent. of the total nucleic acid in the organism; however, a similar study on Chlorella resulted in almost complete failure to extract DNA with hot salt solution. One factor influencing extractability of DNA was brought to light by L ~ n d i n . ~ ~ He con- sidered that tissue samples treated with cold TCA and then with lipid solvents might still remain sufficiently acid to result in degradation of DNA when the tissue residue was extracted with hot sodium chloride solutions.He therefore buffered the first lipid solvent with sodium acetate, as suggested by Marko and Butler,56 and his recoveries of DNA from liver then in- creased four-fold. Using this procedure he observed that less than 10 per cent. of the tissue nucleic acids remained unextracted by hot sodium chloride solution. Schmidt386 has drawn attention to another possible factor preventing successful extraction of nucleic acids with salt solutions, namely, high concentrations of calcium ions, such as might occur in the mammary gland; this would render the nucleic acids less extractable, but does not seem to have impaired extraction of DNA from mammary gland or from the “microsomes” of milk.360 ham mars ten'^^^^ method of nucleic acid extraction and analysis may be regarded as a variant of the hot salt extraction method.After removing lipids from the tissue, he extracted the residue with a boiling solution of saturated sodium chloride - ammonium sulphate to which urea had been added. After several such extractions, the nucleic acids were precipi- tated from the combined extracts with copper sulphate. The isolated nucleic acids can then be separated by the phenol procedure382 or by the Schmidt - Thannhauser In the analysis of human placental tissue, B r ~ d y ~ ~ ~ found that the Hammarsten procedure gave values similar to those obtained by the Schneider but somewhat lower than those by the Schmidt - Thannhauser method; for complete recovery of RNA, Brody found that thirteen extractions with the hot salt - urea solution were necessary.Manoilov and or lo^^^^ have used a method of obtaining nucleic acids from animal tissues in which extraction with saturated salt solution is preceded by treatment with 0.2 per cent. sodium hydroxide solution. Addition of acid to the extract caused partial precipitation of the nucleic acids; the precipitate is said to contain “stable” DNA, whereas the supernatant liquid after acidification contains RNA and “labile” DNA, which are then separated by alkaline digestion. This procedure has not been correlated with conventional methods of analysis. OTHER PROCEDURES FOR EXTRACTING NUCLEIC ACIDS- Several authors have combined two procedures in an attempt to obtain a satisfactory solution to some analytical problem.von Euler and Hahn2101388 used cold 10 per cent. sodium chloride solution and then extraction with 0.2 N sodium hydroxide in the cold and achieved complete extraction of RNA from animal tissues. DNA was only partly removed from the tissue by this procedure; in order to obtain the DNA quantitatively, a separate portion of tissue was heated at 100” C with 0.5 N sodium hydroxide, and the DNA was then precipitated by acidification, thereby utilising the principle of Schmidt and Thannhauser to remove the RNA. In a series of studies on plant and mammary gland nucleic acids, Morton and his colleague^^^^^^^^ eventually devised a procedure in which the tissue was first treated with cold PCA to remove part of the RXA, as in the Ogur - Rosen method, and was then extracted with 10 per cent.sodium chloride solution at 100” C to remove the remaining RNA and the DNA. Logan, Mannell and Rossiter17 used both the Schmidt - Thannhauser and the[Vol. 86 Schneider TCA procedures to obtain a composite picture of the nucleic acid fractions of nervous tissue. Other procedures for nucleic acid extraction have been examined. Sol0monl88~358 observed that phenol extracted more RNA but less DNA from the hen’s egg than did hot PCA. Enzymic extraction of nucleic acids from plant tissues has been described,389 but Ts’o and Sat0~~1 were unable to obtain satisfactory results by this procedure. However, Ed~trOm37~~~~0 has used ribonuclease to extract RNA from single nerve cells as a preliminary to determining their RNA content by a micro-spectrophotometric technique.Pigon and Ed~trOm3~1 have extended the enzymic extraction technique to measurement of nucleic acid changes in a ciliate, for both RNA and DNA. 806 HUTCHISON AND MUNRO : THE DETERMINATION OF NUCLEIC DETERMINATION OF NUCLEIC ACIDS BY ISOLATION OF URACIL AND THYMINE- Since uracil is contained only in RNA and thymine in DNA, the quantitative isolation of these two bases should provide a measure of the RNA and DNA contained in a tissue; for absolute values, the base composition of the nucleic acids of the tissue under examination must be known. The use of this principle in conjunction with the RNA and DNA fractions of the Schmidt - Thannhauser prbcedure has already been discussed. It is possible, however, to isolate the bases directly from the tissue without preliminary separation of the nucleic acids.Jervell, Diniz and Mueller392~393 digested the tissue residue, after washing in acid and lipid solvents, in 98 per cent. formic acid and then separated uridine and thymine by a combination of ion-exchange and paper chromatography; the yield of uridine had to be corrected for a 30 per cent. loss in the course of the procedure. Dutta120 used a similar technique to recover the uracil and thymine from hot PCA extracts of tissues and obtained analyses of liver that differed by about 10 per cent. from those by the Schmidt - Thannhauser and Schneider procedures. McDonald394 experienced difficulty in applying the conventional methods of analysis to rumen contents, but was able to obtain an estimate of total nucleic acid content by hydrolysing the lipid-extracted material with N hydrochloric acid at 100” C to release the purine bases, which were precipitated as their silver salts and purified by paper chromatography . Isolation of bases has been combined with isotope dilution to obtain a measure of tissue RNA and DNA.Solomon1ss~358 extracted the nucleic acids from hens’ eggs with hot PCA or with phenol and measured the RNA and DNA in the extracts by dilution with 1%-uracil and 14C-thymine. Two groups,395 9396 studying the RNA content of enucleated specimens of Acetabularia, added 14C-labelled purine bases to their material and h ydrolysed the samples with N hydrochloric acid at 100” C to isolate the purine bases of RNA, on which measurements of isotope dilution were then made.Finally, thymine has been measured directly on saline homogenates of mammalian tissues by using a specific fluorimetric procedure.254 The results were mostly in close agree- ment with similar determinations made on extracts prepared by the Schneider hot TCA modification of the Schmidt - Thannhauser procedure171; in some tissues the values by direct thymine assay were considerably higher, but in view of the criticisms made earlier in this review of the use of hot acid to extract DNA, the TCA-extracted DNA value is not necessarily the final criterion of accuracy. It is also appropriate to mention here a method for direct isolation of ribonucleotides from tissues without prior removal of acid-soluble small molecules; it has been used by Kemp and Allen397 to determine the RNA in specimens of pancreas.The untreated tissue was digested in piperidine, which released mononucleotides from RNA by alkaline hydrolysis. After precipitation of DNA by acidification, the acid-soluble fraction was subjected to chromatography in order that the 2’- and 3’-mononucleotides arising from RNA hydrolysis might be separated from the 5‘-nucleotides and the 2’,5’- and 3’,S’-diphosphonucleosides arising from the acid-soluble free nucleotides of the tissue. The RNA content of pancreas estimated from summing its 2‘- and 3’-nucleotides gave a value 82 per cent. of its RNA content determined by a modified Schmidt - Thannhauser pr0cedure.7~ MISCELLANEOUS PROCEDURES CONNECTED WITH NUCLEIC ACID DETERMINATIONS- To complete the survey, mention should be made of several procedures and observations not so far considered in this review, but of possible use to future investigators engaged in determining nucleic acids in biological materials.December, 19611 ACIDS I N BIOLOGICAL MATERIALS.A REVIEW 807 In connection with the separation of RNA from DNA, Aldridge39s has observed that the nucleic acids are precipitated by indium chloride and that either RNA or DNA can be precipitated selectively by varying the conditions of pH and ionic strength. I t has also been noted149~399 that RNA and DNA can be separated by electrophoresis on paper. Methods of determining the nucleic acids based on properties of the whole molecule have been described. The nucleic acid content of pure solutions can be measured by p o l a r ~ g r a p h y ~ ~ ~ and by the refractive index.401 Fersini402 has used the binding of methyl green by DNA as a method of determination in tissue extracts; the amount of dye not adsorbed is inversely proportional to the DNA content of the sample.A method of DNA determination based on its inhibitory action on the growth of the ciliate Glaucoma pyriformis has been described.403 Finally, methods proposed for the chemical determination of the purine and pyrimidine bases of RNA not mentioned here will be found in a comprehensive review by Schmidt.404 Measurement of components of DNA and RNA by microbiological assay have been described and are reviewed in detail by Miller.292 They provide a sensitive and specific method of measurement, but involve more elaborate organisation than the common chemical procedures.GENERAL RECOMMENDATIONS FOR NUCLEIC ACID DETERMINATION From this survey of analytical procedures, it is apparent that none has yet been devised that is infallible for nucleic acids. The three main methods-those of Schmidt - Thann- hauser, Schneider and Ogur - Rosen-differ, however, in their liability to error. Most users of the Ogur - Rosen method have failed to obtain the complete separation of RNA from DNA claimed for it. The Schneider method suffers from the disadvantage that, if the conditions of hot acid extraction of the nucleic acids are not optimal, recovery of DNA may be incomplete either because of inadequate extraction or because of destruction of deoxyribose. It is thus unwise to apply the Schneider procedure to an untried tissue without providing some guarantee that no serious underestimate of its DNA content will result.On the other hand, hot acid extraction is a convenient and satisfactory method of obtaining RNA; in conjunction with the use of ultra-violet absorption to measure the extracted RNA, it provides a rapid means of measuring the amount of RNA in, say, cytoplasmic particles not containing DNA. Of the three major procedures, the Schmidt - Thannhauser method in a modified form seems least subject to analytical error and therefore the most suitable to recommend as a first choice. Few users of this procedure have experienced difficulty in determining DNA, but the measurement of RNA in the acid-soluble fraction has proved less satisfactory. The use of phosphorus determinations on the acid-soluble fraction as a measure of its RNA content-the original procedure-is not satisfactory, and the determination of ribose by the orcinol procedure is sometimes liable to large errors due to the presence of other carbo- hydrates.Determination of RNA is best achieved by shortening to 1 hour the period of alkaline digestion of the tissue residue and then measuring the ultra-violet absorption of the acid-soluble fraction of the digest. Under these conditions, errors in ul tra-violet absorption due to protein-degradation products are minimal, but this relative absence of protein should be confirmed by determining protein and by examining the ultra-violet spectrum of the acid-soluble fraction. A modified Schmidt - Thannhauser procedure embodying these and other recommendations is shown in Fig.4. The choice of method in relation to the amounts of material available is largely deter- mined by the sensitivity of the final determination of RNA or DNA chosen. Methods of DNA determination by recently developed fluorimetric procedures offer a highly sensitive means of analysis on a few cells; for RNA, Ed~trOm~~O has provided a method applicable to single nerve cells. Whatever the method used, the choice of standards for the measurement of RNA and DNA is important. Ideally, this should be a sample of RNA or DNA isolated in pure form from the tissue on which the determinations are being performed. Thus, orcinol reacts mainly with the purine ribosides, so that variations in the proportion of purine bases in RNA will influence the result of this test if a suitable RNA standard is not employed.Simi- larly, isolation of thymine or uracil as a measure of tissue DNA or RNA demands a knowledge of the base ratios of the nucleic acids in the tissue. Plant tissues and some bacteria have proved rather intractable on account of the amount of Finally, tissues vary in the difficulty they present for determining nucleic acids.508 HUTCHISON AND MUNRO: THE DETERMINATION OF NUCLEIC [Vol. 86 plysaccharide, metaphosphate and so on they contain and, with the Schmidt - Thannhauser procedure, because of lack of complete solubility in alkali. Investigators who are studying such material might profit by reading the papers of Smillie and Krotkov,32 Sherratt and Thomas123 and Morton and Martin279 on their studies of plant tissue, Juni, Kamen, Reiner and S~iegelrnanl~~ on yeast, Winder and D e n n e n ~ l ~ ~ on the subject of bacteria, Solomon358 on embryonic tissues and eggs and Logan, Mannell and Rossiterl7 on nervous tissue.These publications may help to suggest other approaches to meet analytical difficulties. I . 2. 3. 4. 5. 8. S. 9. 10. 1 1 . 12. 13. 14. 15. 16. 17. 18. 19. 20. 91. 22. 23. 24. 25. 26. 27. 28. 29. 30. 31. 32. 33. 34. 35. 36. 37. 39. 40. 41. 42. 43. 44. 45. 46. 47. 48. 49. 50. 61. 52. 53. 54. I . 38. REFERENCES Potter, V. K., “Nucleic Acid Outlines,” Volume I, “Structure and Metabolism,” Burgess Publishing Bieth, R., Mandel, P., and Stoll, R., Corn@. Rend. Soc. Biol., Paris, 1948, 142, 1020. Davidson, J. N., and Leslie, I., Cancer Res., 1950, 10, 587, Campbell, R.M., and Kosterlitz, H. W., J . 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L., Alfin-Slater, R. B., and Larack, A. M., Cancer, 1949, 2, 510. Schneider, W. C., Cancer Res., 1945, 5 , 717. Hermann, H., and Nicholas, J. S., J . E x p . Zool., 1949, 112, 341. Novikoff, A., quoted in discussion of Koenig, H., and Stahlecker, J., J . Nut. Cancer Inst., 1951, Finamore, F. J., Exp. Cell Res., 1957, 12, 356. [Vol. 86 Physiol., 1951, 37, 355. Inc., New York, 1958, Volume VI, p. 31. 12, 237 (ref. 206).December, 19611 ACIDS I N BIOLOGICAL MATERIALS. A REVIEW 813 334. 335. 336. 337. 338. 339. 340. 341. 342. 343. 344. 345. 346. 347. 348. 349. 350. 351. 352. 353. 354. 355. 356. 357. 358. 359. 360. 361. 362. 363. 364. 365. 366. 367. 368. 369. 370. 371. 372. 373. 374. 375. 376. 377. 378. 379. 380. 381. 382. 383. 384. 385. 386. 387. 388. 389. 390. 391. 392. 393. 394. 395. 396. 397. 398. 399. 400. 401. 402. 403. 404. Ogur, M., Erickson, R. O., Rosen, G., Sax, K. I3., and Holden, C., Ibid., 1951, 2, 73. Niaza, S., and State, D., Cancer Res., 1948, 8, 653. Ayala, W., Moore, L. V., and Hess, E. L., J . C1i.n. Invest., 1951, 30, 781. Yamashita, T., and Yamada, M., Igaku to Seibutsugaku, 1954, 21, 253. Pirie, N. W., Brit. J . Exp. Path., 1936, 17, 269. Potter, V. R., Recknagel, R. O., and Hurlbert, K. B., Fed. Proc., 1951, 10, 646. Durand, M. C., Conzpt. Rend., 1955, 241, 1340. Roberts, K. B., Florey, H. W., and Joklik, \V. K., Quart. J . Exp. Physiol., 1952, 37, 239. Flexner, J. B., and Flexner, L. B., J . Cell. Comp. Physiol., 1951, 38, 1. Burt, N. S., Murray, R. G. E., and Rossiter, R. J., Blood, 1951, 6, 906. Hess, E. L., and Lagg, S. E., J . Biophys. Biochem. Cytol., 1958, 4, 717. Klein, G., and Forssberg, A,, .Exp. Cell Res., 1954, 6, 211. Brody, S., Acta Obstet. Gynecol. Scand., 32, supplement 6. Ogur, M., and Rosen, G., Fed. Proc., 1949, 8, 234. Holmes, B. E., Mee, L. K., Hornsey, S., and Gray, L. H., Exp. Cell Nes., 1955, 8, 101. Basler, E., and Commoner, B., Virology, 1956, 2, 13. Holden, M., Biochem. J., 1952, 51, 433. Ts’o, P. 0. P., and Sato, C. S., Exp. Cell Ries., 1959, 17, 327. Soldo, A. T., Arch. Biochem., 1955, 55, 71. Kuroiwa, Y., and Horie, Y., Bull. Agric. Chew. SOC. Japan, 1955, 19, 36. Kawasaki, N., Taki, I., Watanabe, C., Matoba, K., Nishio, M., and Shinagawa, T., Nifipon Saikin- Stansley, P. G., and Chu, M. W., Exp. Cell Res., 1960, 20, 206. Hadjiolov, A. A., Z. Krebsforsch., 1958, 62, 361. Rose, I. A., and Schweigert, B. S., Proc. SOL. Ex$. Riol. Med., 1952, 79, 541. Solomon, J. B., Biochim. Biophys. Acta, 1957, 24, 584. Steinert, M., Bull. SOC. Chitn. Biol., Paris, 1951, 33, 549. Bailie, M. J., and Morton, R. K., Biochem. J . , 1958, 69, 44. Kit, S., Bacila, M., and Barron, E. S. G., Biochim. Biophys. Acta, 1954, 13, 516. Solomon, J , B., Ibid., 1957, 23, 24. Loeb, H. G., and Dickinson, E., Arch. Bioch.em. Biophys., 1955, 57, 515. Bhargava, P. M., Bishop, M. W. H., and Work, T. S., Biochem. J., 1959, 73, 242. Ogur, M., Minckler, S., Lindegren, G., and Lindegren, C. C., Arch. Biochem., 1952,40, 175. Berenbom, M., and Peters, E. R., Radiation Res., 1956, 5, 515. Erickson, R. O., Sax, K. B., and Ogur, M., Science, 1949, 110, 472. Seschachar, B. R., and Flick, F. W., Ibid., 1949, 110, 659. Sulkin, N. M., and Kuntz, A., Proc. SOL. Exp. Bid. Med., 1950, 73, 413. Cassel, W. A., J . Bact., 1950, 59, 185. Koenig, H., and Stahlecker, H., Proc. SOC. Exp. Biol. Med., 1952, 79, 159. Di Stefano, H. S., Science, 1952, 115, 316. Edstrom, J.-E., Biochim. Biophys. Acta, 1953, 11, 300 and 12, 361. Franz, F., von Werder, I., and Meyer-Arendt, J., Naturwissenschaften, 1954, 41, 165. Jorpes, E., Acta Med. Scarzd., 1928, 68, 253 and 503. -, Biochem. J., 1934, 28, 2102. Javillier, M., and Allaire, H., Bull. SOC. Chim. Biol., Paris, 1926, 8, 924. Brues, A. M., Tracy, M. M., and Cohn, W. E., J . Bid. Chem., 1944, 155, 619. Caspersson, T., Hammarsten, E., and Hammarsten, H., Trans. Faraday SOC., 1935, 31, 367. Caspersson, T., Skand. Arch. Physiol., 1936, 74, Suppl. 8. Hammarsten, E., Acta Med. Scand., 1947, Suppl. 196, 634. Williams, R. F., Austral. J . Exp. Biol. Med. Sci., 1945, 23, 213. Thomas, A. J., and Sherratt, H. S. A, Biochem. J . , 1956, 62, 1. Davidson, J . N., Cold Spring Harbor Symp. Quant. Biol., 1947, 12, 50. Schmidt, G., in Colowick, S . P., and Kaplan, N. O., Editors, op. cit., Volume 111, p. 747. Manoilov, S. E., and Orlov, A. S., Biokhimiya, 1958, 23, 663 (623 in translation), von Euler, H., and Hahn, L., Arch. Biochem., 1948, 17, 285. Kmetec, E., and Newcombe, E. €-I., Amer. J . Bot., 1956, 43, 333. Edstrom, J.-E., Ex$. Cell Xes., 1957, Suppl. 4, 264. Pigon, A., and Edstrom, J.-E., Ibid., 1959, 16, 648. Jervell, K. F., Diniz, C. R., and Mueller, G. C., J . Biol. Chew., 1958, 231, 945. McDonald, I. W., Biochem. J . , 1954, 57, 566. Brachet, J., Chantrenne, H., and T:anderhaeghc, I;., Biochinz. Riophys. Acta, 1955 18, 544. Naora, H., Richter, G., and Waora, H., Exp. Cell Res., 1959, 16, 434. Kemp, J. W., and Allen, F. W., Biochim. Biophys. A d a , 195S, 28, 51. Aidridge, W. G., Nature, 1960, 187, 323. Schiimmelfeder, N., and Heyer, Mi., Naturwissenschaften, 1954, 41, 164. PaleCek, E., Ibid., 1958, 45, 186. Englander, S. W., and Epstein, H. T., Arch. Biochem. Biophys.. 1957, 68, 144. Fersini, C., Boll. SOL. Ital. Biol. Sper., 1953, 29, 1624. Railenger, J., Bull. SOC. Pharm. Marseilles, 1952, 8, 53. Schmidt, G., in Colowick, S. P., and Kaplan, N. O., Editors, op. cit., Volume 111, p. 775. gaku Zasshi, 1957, 12, 125. , , Ibid., 1931, 13, 678. -- - , -- , - , Arch. Biochem. Biophys., 1968, 78, 157. Received J u l y loth, 1961
ISSN:0003-2654
DOI:10.1039/AN9618600768
出版商:RSC
年代:1961
数据来源: RSC
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8. |
Elimination of interfering citrate and mineral acids in the spectrophotometric determination of phosphorus in fertilisers |
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Analyst,
Volume 86,
Issue 1029,
1961,
Page 814-820
Sven-Eric Dahlgren,
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摘要:
814 DAHLGREN : SPECTROPHOTOMETKIC DETERMINATION [Vol. 86 Elimination of Interfering Citrnte and Mineral Acids in the Spectrophotometric Determination of Phosphorus in Fertilisers':: BY SVEN-ERIC DAHLGREK (Research and Development Department, A B Forenade Superfosfatfabriker, Landskrona, Sweden) Existing methods for destroying citrate by wet-ashing procedures have been examined ; more detailed methods were needed to give reproducible amounts of mineral acid in the residue after destruction of the citrate. Different ways of removing interference by acid with development of colour have also been investigated. The best way was found to be by partial neutralisation of the extra acid after addition of the molybdovanadate reagent solution. Application of the method to the determination of total P,O, is described.COMMERCIALLY, phosphorus in fertilisers is determined by treating samples with water and neutral or alkaline solutions of ammonium citrate (or citric acid for samples of basic slag), and the phosphorus content of the extract is then determined; this is carried out in accordance with official methods, which differ in various countries. With the trend towards more rapid methods of analysis, the spectrophotometric molybdovanadate procedure for determining phosphorus has evoked great interest and has been adopted as official in the U.S.A. and the U.K. However, in this method, the presence of citrate ion above a certain limit interferes with development of the colour, and destruction of the citrate is the logical way to remove such interference and to make possible general adoption of the spectrophotometric procedure. Citrate can be destroyed by a wet-ashing procedure,1~2~3~4 but when this technique was applied, a more detailed study was found necessary to attain the highest possible accuracy.Spectrophotometric methods have often been declared unreliable, but the development of difference spectrophotometry has made possible the attainment of as high a precision as is achieved by volumetric analysis, provided that the technique used takes into account possible sources of error. A general treatment of the factors influencing precision in a form adapted to practical application has already been madee5 In this work, all optical-density measurements were made at 4200 A with a Beckman B spectrophotometer and 10-mm glass cells, and the solutions used were prepared as described below. Reagent solution-Dissolve 20 g of ammonium molybdate in 400 ml of water at 50" C and 1 g of ammonium vanadate in 300 ml of water; acidify the latter solution with 140 ml of nitric acid, sp.gr.1.40. Slowly and with constant stirring, add the molybdate solution to the acid vanadate solution, and dilute the mixture to 1 litre. Standard PhosPhate solution-Dry potassium dihydrogen ort hophosphate for 2 hours at 105" C, grind it, and dry for a further 2 hours at 105" C. Dissolve 0.4793 g of the dried salt in water, add a few drops of chloroform as preservative, and dilute in a calibrated flask to 1 litre. 1 ml = 0-25 mg of P205. Reference solution-By means of a piston burette, measure 20.00 ml of standard phos- phate solution into a 100-ml calibrated flask, add 30.0 ml of the reagent solution, and dilute to the mark.NOTE-The reference solution should be prepared a t the same time as colour is developed in the sample solution, and both should be set aside for a t least 10 minutes to attain complete development of the colour. This ~ o l u t i o n ~ ~ ~ contains 5 mg of P,05. INTERFERENCE FROM CITRATE The effect of citrate ion on development of colour is shown in Fig. 1, in which the citrate content of the final solution is plotted against the value of d (the difference between the optical * Presented a t the Technical Meeting of The International Superphosphate Manufacturers' Association, Wiesbaden, September, 1961.December, 19611 OF PHOSPHORUS I N FERTILISERS 815 densities of the sample and reference solutions).It can be seen that, in a final coloured solution containing 5 mg of P205 per 100 ml, there is no interference when the citrate content is 150 mg or less. At contents above 150 mg, interference is apparent and is more pronounced when the citrate is added as citric acid than when it is added as Petermann’s solution7 (a solution of ammonium citrate made alkaline with ammonia). Citrate ion per 100 ml of final solution, mg Interference by citrate ion with colour developed by 5mg of P,O, in 100ml of final solution (d = difference between optical densities of sample and reference solutions) : curve A, citrate added as Petermann’s solution; curve B, citrate added as citric acid Fig. 1.For an aliquot of sample containing 5 mg of P205, when the water- and citrate-soluble P,05 are extracted in accordance with official Swedish procedure,’ interference will occur with all fertilisers containing less than 21 per cent. of P205, and the limit will be 27 per cent. of Pz05 content of sample, % Fig. 2. Relationship between P,O, content of sample and amount of Peter- mann’s solution in aliquot containing 5mg of P,O, when official Swedish method’ is used: curve A, citrate-soluble extract ; curve B, water- and citrate- soluble extract P205 when an aliquot containing 6.5mg of P,O, is taken. soluble P205, interference will occur with even the high-grade fertilisers. will be no interference with the determination of P,O, soluble in citric acid. In determinations of citrate- However, there This means816 DAHLGREN : SPECTROPHOTOMETRIC DETERMINATION p-01.86 that, in practice, citrate ion will generally interfere. Procedures for overcoming or compen- sating for interference from citrate are limited in their application, except for those involving destruction of the citrate, and only these latter were studied. In an aliquot containing 5 mg of P,O,, the accompanying amount of Petermann’s solution will depend on the percentage of P20, in the fertiliser and on the method of extraction. In Fig. 2 the relationship between the accompanying amount of Petermann’s solution and the P205 content of the sample is shown; Petermann’s solution contains, per ml, 156 mg of citrate ion and 54mg of ammonium ion. DESTRUCTION OF CITRATE IN DILUTE SOLUTION- the procedure described below. Brabson and Wilhide3 studied the destruction of citrate in dilute solution and devised An aliquot of the citrate-bearing extract containing 4 to 6.5 mg of P,O, is placed in a 125-ml Erlenmeyer flask, and 10ml of a mixture of nitric and perchloric acids (300 ml of 70 per cent.perchloric acid $Zus 700 ml of nitric acid, sp.gr. 1-40) and 5 ml of a 20 per cent. solution of sodium chlorate are added. The solution is warmed on a hot-plate (medium heat) until it begins to bubble, when the temperature is decreased. The flask is moved as necessary to keep the reaction going. Finally, the solution is evaporated until fumes of perchloric acid are evolved and maintained at this stage for 2 minutes. (It is easier to determine the end-point if the heating to fumes is continued until crystals just appear.) When the solution is cool, water is added to dissolve the crystals, and the solution is heated for 10 minutes to hydrolyse non-orthophosphates. I t is then transferred to a 100-ml calibrated flask and diluted to about 50 ml, 30 ml of molybdovanadate reagent solution are added, and the mixture is diluted to the mark.When this method is used, citrate is destroyed, but the introduction of acid affects the acidity of the final solution, thereby interfering with the intensity of colour. The problem 0.6 Z 2 0.4 E U .- m C .- !i $ 0-2. C - has - - ” I 0 therefore changed Petermann’s solution present, mi Fig. 3. Increase in acidity of final coloured solution produced by destroying citrate in Petermann’s solution Brabson and Wilhide’s method was applied to a series of solutions each containing 20 ml of water and a different amount of Petermann’s solution, and the residual amounts of acid were determined. The results are shown in Fig.3, from which it can be seen that this amount is constant in presence of less than 2.5 ml of Petermann’s solution, but is considerably increased when more Petermann’s solution is present. As more than 2.5 ml of Petermann’s solution is frequently used, the ammonia must be destroyed in order to obtain a reproducible amount of acid. This complication was not reported by Brabson and Wilhide,3 who, however, used a neutral solution of ammonium citrate and so introduced less ammonia. With 2.5 ml of Petermann’s solution, 135 mg of ammonium ion are introduced, of which 91 mg remain after destruction of citrate; with 3.3 ml of Petermann’s solution, the corresponding figuresDecember, 19611 OF PHOSPHORUS I N FERTILISERS 817 are 178 and 157 mg.Some destruction of ammonium ion therefore occurs when the citrate is destroyed. It was thought that, in dilute solution, ammonium ion might be destroyed by oxidation to nitrous oxide in a mixture of hydrochloric acid, a little nitric acid and perchloric acid,8 and, after different procedures for destroying ammonium ion had been tested, the method described below was adopted. Proceed with the destruction of citrate described above until the solution is colour- less, and allow it to cool; at this stage, sufficient nitric acid remains. Dilute with 5 ml of water, add 1 ml of concentrated hydrochloric acid, and continue in accordance with the original procedure.No ammonia remains, and the residue contains 25 milli-equiva- lents of perchloric acid. The results reported by Brabson and Wilhide3 showed a bias of about 0-5 per cent. caused by the acid in the residue. INTERFERENCE FROM MINERAL ACIDS If, during treatment of the sample, acid is introduced, the remedies listed below are 1. With the reference solution the usual reagent solution is used, but with the sample solution another reagent solution is used. The combined acid contents of this reagent solution and the sample solution should be about the same as that of the reference solution. 2. The same reagent solution is used with both sample and reference solutions, but to the reference solution is added as much acid as is introduced with the sample.This can be done in two ways: (a) the acid in the reagent solution, together with that in the sample, must give the usual acidity in the final coloured solution or (b) the ordinary reagent solution is used. 3. The acid in the sample is neutralised; this could be done either (a) before or (b) after addition of the reagent solution. In this work, 20ml of standard phosphate solution were present in both sample and reference solutions. When the ordinary reagent solution was used and no extra acid was introduced with the sample, the acidity of the final coloured solution was 0.61 N. To study remedy 1, different amounts of nitric acid were added to the standard phosphate solution, and the reagent solution added had an acid content that made the final solution 0.35 N.These colours were compared with that of an ordinary reference solution. From conceivable. INVESTIGATION OF POSSIBLE REMEDIES- Acidity of final solution. N Fig. 4. Effect of acidity of final coloured solution on difference, d , between optical densities of sample and reference solutions: (a), remedy 1 used; (b), remedy 2 (a) used Acidity of final solution, N Fig. 5 . Effect of acidity of final coloured solution OR difference, d, between optical densities of sample and refercnce solutions when remedy 2 (b) is used818 DAHLGREN : SPECTROPHOTOMETRIC DETERMINATION [Vol. 86 Fig. 4 (a) it can be seen that this remedy cannot be applied; a value of d of 0.001 means a relative analytical error of 0.1 per cent.For remedy 2 (a) the sample solutions were prepared as described above and the reference solution by adding 26 milli-equivalents of nitric acid to the standard phosphate solution. A special reagent solution was used to make the final coloured solution 0.61 N in acid. Fig. 4 (b) shows that this remedy is useful if the sample introduces 10 to 35 milli-equivalents of acid into the final solution. This remedy was suggested by Brabson and Wilhide3 and later adopted ~fficially.~ A reagent solution having such low acidity, however, is stable only for about 1 week. For remedy 2 (b), the usual reagent solution was used, and, in preparing the reference solution, 25 milli-equivalents of nitric acid were added to the standard phosphate solution before the reagent solution was added.The sample solution was prepared in the same way, except that the amount of nitric acid was varied. Fig. 5 shows that this remedy cannot be applied. Deviations from the usual conditions were next studied, and three of the sample solutions were treated in three ways: (i) nitric acid was added before the reagent solution (branch A in Fig. 6); (ii) sodium hydroxide solution was added before the reagent solution (branch B) and (iii) sodium hydroxide solution was added after the reagent solution (branch C). It was found that the sample solution must not be alkaline before addition of the reagent solution. Acidity of final solution, N Fig. 6. Effects of deviation from usual conditions when nitric acid and sodium hydroxide solutions are added To study remedy 3 (a), different amounts of sodium nitrate solution were added to the sample solutions, Fig.7 (a) indicates no improvement in results compared with when neutralisation was omitted (see branch A in Fig. 6). It was found, however, that neutralisa- tion gave a positive optical-density difference and omission of neutralisation a negative one; partial neutralisation would therefore be expected to give a wider useful range, owing to compensation, and Fig. 7 (b) shows that this is so. Here, the acidity has been increased by 0.05 N in the sample solution and different amounts of sodium nitrate solution have been added. For remedy 3 (b), the extra nitric acid was neutralised after the reagent solution had been added (see Fig. S), and up to 30 milli-equivalents of acid could be introduced with the sample without any effect on the optical density; the result was the same when perchloric acid was used instead of nitric acid.To study the effect of erroneous neutralisation in the sample, 24 milli-equivalents of nitric acid were added, and, after addition of reagent solution, this acid was neutralised by different amounts of sodium hydroxide solution. Fig. 9 shows that an excess of sodium hydroxide is harmful, but that a deficiency of up to 10 milli-equiva- lents is not. During neutralisation, the temperature of the solution increases by several degrees, so that it is necessary to cool before diluting to the mark.December, 19611 OF PHOSPHORITS IN FERTILISERS 819 Of the possible remedies] 3 (b) is the best choice.An excess of sodium hydroxide causes less harm than with remedy 3 (a), and, compared with remedy 2 ( a ) , the ordinary and stable reagent solution is used. I t is advisable to add about 5 milli-equivalents of sodium hydroxide less than the amount of acid introduced with the sample. This means that, in the modified version of Brabson and Wilhide's method for destroying citrate, 9 ml of 2 N sodium hydroxide must be added to the sample solution before dilution to the mark. -0 Lc a, 3 a - > - 0.0 I I -0.011 I I I I 0 0.2 0.4 0.6 Sodium nitrate in final solution, N Fig. 7. Effect on difference, d, between optical densities of sample and reference solutions of ( a ) adding sodium nitrate and (b) adding sodium nitrate when the acidity of the sample solution had been increased by 0-05 N I - 0.0 II I I I I I I 0 0.2 0.4 0.6 Extra nitric acid, N Fig.8. Effect on difference, d, between optical densities of sample and reference solutions of extra nitric acid when neutralised after addition of reagent solution DESTRUCTION OF CITRATE IN CONCENTRATED SOLUTION In the destruction method already described, the sample must be carefully watched during fuming, as it contains perchlorates and there is risk of explosion if it is left alone on the hot-plate. It was therefore desirable to find an alternative method having no such hazards; a method described by Gehrke and Johnson: who used a concentrated mixture of nitric, perchloric and sulphuric acids, seemed to be adequate. The acid mixture was prepared by mixing 10 parts by volume of 70 per cent.nitric acid, 4 parts of 70 per cent. perchloric acid and 2 parts of 96 per cent. sulphuric acid, the sulphuric acid being added to the nitric acid and mixed well before addition of the perchloric acid. To an aliquot of the citrate-bearing extract containing 4 to 6-5 mg of P,O, in a 100-ml Erlen- meyer flask were added 5 ml of the acid mixture, and the solution was heated on a hot-plate.820 DAHLGREN [Vol. 86 First, water vapour was evolved, and, when the temperature of the solution had reached about 140” C, destruction of citrate began; after continued heating, the discoloration caused by charring completely disappeared. For reasons already made clear, this amount of acid must be reproducible in order to obtain correct conditions for development of colour.However, Gehrke and Johnson’s method did not give reproducible amounts of residual acid. Further experiments were carried out with samples containing 20 ml of standard phosphate solution and different amounts of Petermann’s solution. A 5-ml portion of the acid mixture contains 22.5 milli-equivalents of sulphuric acid, 47.5 of nitric acid and 14.5 of perchloric acid. About the same time as destruction of citrate begins, the nitric acid evaporates, and, as the temperature of the solution increases, the perchloric acid also evaporates; this evaporation is complete at about 200” C. The perchloric acid tends to condense on the walls of the flask, and, as long as condensation takes place, complete evaporation of perchloric acid is impossible. Such condensation can be avoided by surround- ing the flask with an open steel cylinder of the same height as the flask; further control of the surface temperature of the hot-plate was found to be essential, the best results being obtained at 240” C.The total time for destruction of citrate and evaporation of acid under these conditions was 65 minutes. If, after this period, slight discoloration should remain, heating must be continued for a few minutes until the solution is colourless. The solution is then allowed to cool, 20 ml of water are added, and the mixture is heated for 10 minutes to hydrolyse non-orthophosphates. For partial neutralisation of the acid in the residue, 3.7 ml of 2 N sodium hydroxide are added after the reagent solution, and the solution is cooled to room temperature before dilution to the mark.With this modified technique, citrate was destroyed in more than forty samples, each containing a different amount of Petermann’s solution up to 4 ml and 5 mg of P205. The mean value of d , the difference between the optical densities of sample and reference solutions, was 0.000, with a mean deviation of 0.001; the method therefore involves no bias. APPLICATION TO DETERMINATION OF TOTAL P205- In the procedure described above, citrate interference is converted into mineral acid interference, and this is eliminated. In the determination of total P205, further amounts of mineral acids are introduced when the aliquot is taken. For different kinds of material, different methods of digestion are used, and each method gives a certain acidity in the extract.If this acidity, the dilution and the size of the aliquot are known, the additional amount of acid can easily be determined. If there are more than 10 milli-equivalents in the aliquot, the solution must be partly neutralised as described above. After destruction of the citrate, some acid remains in the residue. A thermostatically controlled hot-plate is recommended. COLOURED IMPURITIES- The amounts of coloured metal ions in extracts from phosphate rocks and products manufactured therefrom are generally so low that these ions do not affect the spectrophoto- metric measurement. The most common is iron, and if the ratio of Fe to P,O, in the extract is less than 0.5, interference can be neglected. If the ratio is greater than 0.5, the syectro- photometric method cannot be recommended for determining the P,05, nor can it be recom- mended if the extract contains impurities forming coloured complexes with the molybdo- vanadate reagent. I thank Mr. Kornd Horv5th, who, with great care and interest, carried out all the measurements. REFERENCES 1. 2. 3. 4. 5, 6. 7 . 8. 9. J . Ass. Off. Agric. Chem., 1961, 44, 133. Teague, R. T., jun., J . Ass. Ofl. Agric. Chem., 1953, 36, 880. Jacob, K. D.. and Hoffman, W. M., Ibid., 1954, 37, 334. Brabson, J. A., and Wilhide, W. D., Ibid., 1959, 42, 574. Gehrke, C. W., and Johnson, F. J., Ibid., 1959, 42, 569. Dahlgren, S-E., Teknisk Tidskrift., 1960, 90, 983. Craven, P., and Schwehr, E. W., “Joint Svmposium on Fertiliser Analysis,” Proceedings No. 62, The Fertiliser Society, London, 1961, p. 131). Icungl. Lantbruksstyrelsens Kungorelser, KO. 7, Statens Reprodulitionsanstalt, Stockholm, 1950. Treadwell, F. P., “Analytical Chemistry,” Ninth Edition, John TViley & Sons Inc., New York, 1946, Volumc I, p. 426. Received J m e 19th, 1961
ISSN:0003-2654
DOI:10.1039/AN9618600814
出版商:RSC
年代:1961
数据来源: RSC
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9. |
The estimation of cellulose and household coal in town-refuse compost |
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Analyst,
Volume 86,
Issue 1029,
1961,
Page 821-825
L. J. Mebius,
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PDF (407KB)
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摘要:
December, 19611 MEBIUS 821 The Estimation of Cellulose and Household Coal in Town-refuse Compost BY L. J. MEBIUS (Institziut VOOY Bodemvruchtbaavheid, Van Hallstraat 3, Groningen, The Netherlands) After treatment with Scharrer and Kurschner’s reagent, the cellulose in compost is determined by direct titration with potassium dichromate solution; the presence of household coal does not interfere. By determining the loss on ignition *of the residue after treatment with the reagent, the household-coal content can easily be ascertained by difference. TN Gerretsen and Campen’s method for determining household coal in town-refuse compost,l the sample is boiled with the reagent described by Scharrer and Kiirschner.2 This dissolves some of the organic substances, such as proteins and lignin, but not the cellulose and household coal.Some of the hemicelluloses are also dissolved, but it is not certain that the disintegration of hemicelluloses is quantitative. Gerretsen and Campen suggested solution of the cellulose in Schweitzer’s reagent, or hydrolysis of it by sulphuric acid, and then determination of the household coal by ignition of the residue in a muffle furnace; the decrease in weight was considered to represent the coal. In a parallel determination, the sample was treated with Scharrer and Kurschner’s reagent, but not with Schweitzer’s solution, and was then ignited; the loss on ignition represented the sum of the cellulose (perhaps together with some of the hemicelluloses) and household coal present. The difference between the results of the two determinations was claimed to represent the cellulose.The determination of cellulose content was consequently indirect and subject to all the uncertainties of such methods. After further research at the Institute for Soil Fertility, a direct procedure for deter- mining cellulose in town-refuse compost has been devised; in this method, the cellulose in the residue left after treatment of the sample with Scharrer and Kurschner’s reagent is deter- mined by modification of the dichromate-oxidation method described by Kurmies3 and often used for determining organic matter in soil. EXPERIMENTAL Initially, pure cellulose (filter flakes, obtained from Messrs. Schleicher and Schull) and ground coke were subjected to oxidation with dichromate by Kurmies’ method; later, town- refuse compost and humic acid (obtained from E.Merck A.G.) were included in the experi- ments. Three factors were studied: (a) the effect of the concentration of sulphuric acid used, (b) the effect of treatment with Scharrer and Kurschner’s reagent on the amount of cellulose recovered and (c) the percentage recovery of cellulose after oxidation by the dichromat e solution. EFFECT OF CONCENTRATION OF SULPHURIC ACID ON OXIDATION OF CELLULOSE AND COKE In each of a series of 250-ml calibrated flasks containing a known weight of sample were placed 25 ml of 2 N potassium dichromate and 40 ml of sulphuric acid of known con- centration. Each flask was heated for 90 minutes in a bath of boiling water, with intermittent shaking, and, when cool, its contents were diluted to the mark and mixed.A 25-ml portion of this solution was transferred, by pipette, to a 250-ml beaker containing 25 ml of 0.22 N ferrous sulphate, a few drops of N-phenylanthranilic acid indicator solution were added, and the excess of ferrous sulphate was titrated with 0.1 N potassium permanganate until the colour changed from green to violet. A blank experiment was carried out concurrently. The results of these experiments are listed in Table I. It is obvious from these results that, when the concentration of sulphuric acid is not greater than 15 per cent. w/w, oxidation of coke (and certainly of household coal) is negligible and will not interfere with the determination of cellulose in compost, whereas the cellulose was oxidised almost quantitatively.BY DICHROMATE-822 MEBIUS THE ESTIMATION OF CELLULOSE [Vol. $6 TABLE I EFFECT OF CONCENTRATION OF SULPHURIC ACID ON OXIDATION OF VARIOUS MATERIALS Carbon content found by elemental Sample analysis, % Ground coke.. 80-4 Cellulose . . 44.4* Compost . . 24.2 Humic acid . . 48.8 Carbon content found in solution after oxidation with dichromate and- 06% w/w 77% w/w 68.6% w/w 34-sy0 w/w 26% w/w 20% w/w 15% w/w sulphuric sulphuric sulphuric sulphuric sulphuric sulphuric sulphuric acid, acid, acid, acid, acid, acid, acid, A f 1 % % % % % % % 34.0 14.0 4.2 1-5 1.8 1.3 1.4 42.4 41.4 41-6 40.7 40.8 40.8 40.8 20.8 18.6 15.8 13.7 13.3 13.1 12.8 - 26.0 48.7 40.8 34.1 28.8 - * Theoretical value. RECOVERY OF CELLULOSE AFTER TREATMENT WITH SCHARRER AND KURSCHNER’S REAGENT- Different amounts of pure cellulose were boiled with Scharrer and Kurschner’s reagent (see “Reagents,” p.823); blank tests, in which the cellulose was boiled with distilled water, were carried out concurrently. The residues were washed with water alone or with water and then acetone. The results, each of which is the mean of three deteminations, are shown in Table 11. TABLE I1 RECOVERY OF PURE CELLULOSE AFTER BOILING WITH SCHARRER AND KURSCHNER’S REAGENT Cellulose recovered after boiling with water; residue Cellulose washed with water and taken, acetone (A), mg mg 60 60.3 100 100.7 200 196.4 Cellulose recovered after boiling with Scharrer and Kiirschner’s reagent- residue washed with water and residue washed Ratio of acetone (B), with water only, A to B mg mg 45.9 - 1.089 93.1 91.3 1.074 181.6 181.0 1.082 Mean .. .. 1.082 From the results, it is evident that cellulose is slightly attacked by the reagent, since recovery was almost complete in the blank tests. However, the amount of cellulose originally present can be derived by multiplying the amount recovered by 1.08; the value of this factor proved to be almost independent of the amount of cellulose taken. OXIDATION OF CELLULOSE BY TREATMENT WITH DICHROMATE- Pure cellulose was first boiled with Scharrer and Kiirschner’s reagent and then oxidised by potassium dichromate solution and acid; both concentrated and 15 per cent. w/w sulphuric acid were used. All experiments were carried out in triplicate, and the mean results are shown in Table 111. TABLE I11 CELLULOSE OXIDISED BY DICHROMATE Carbon oxidised* after treatment with potassium dichromate solution and- r A Conversion concentrated 15% w/w factor (ratio Pre-treatment sulphuric acid, sulphur& acid (A), of 44.44 to A) % % None .... * . .. L . .. 42.35 40.80 - Boiled with water . . .. .. .. .. 42.86 40.82 - Boiled with Scharrer and Kurschner’s reagent; Boiled with Scharrer and Kurschner’s reagent; 42.13 39.59 1-123 residue washed with water . . .. .. { 41-34 39-64 1.121 residue washed with water and acetone . . 41.72 39.72 1,119 Mean .. 1.121 * Calculated from the weight of residue after the pre-treatment.December, 19611 AND HOUSEHOLD COAL IN TOWN-REFUSE COMPOST 823 I t can be seen from these results that, again, not all of the cellulose is oxidised, but the correct figure can be calculated by multiplying the amount found by 1-12.The results of these experiments were reproducible, and it was therefore considered justifiable to recom- mend the method described below for determining cellulose and household coal in town-refuse compost, METHOD REAGENTS- Scharrer and Kiirschner's reagent2-Prepare a solution of 70 per cent. acetic acid con- taining, per litre, 27.5 g of trichloroacetic acid and 68 ml of nitric acid, sp.gr. 1.4. A cetone. Sulphuric acid, 15 per cent. w/w-Add 94ml of sulphuric acid, sp.gr. 1-84, to water, allow to cool, and dilute with water to 1 litre. Potassium dichromate, 2 N-Dissolve 98 g of potassium dichromate in water, add 100 ml of sulphuric acid, sp.gr. 1.84, and dilute with water to 1 litre.Ferrous sulphate, 0.22 N-Mix 60 g of ferrous sulphate heptahydrate with 120 ml of sulphuric acid, sp.gr. 1.84, and dilute with water to 1 litre. Potassium permanganate, 0- 1 N. Indicator solution-Dissolve 200 mg of N-phenylanthranilic acid in 100 ml of a 0.2 per cent. w/v solution of sodium carbonate. PRE-TREATMENT OF SAMPLE- Weigh 500mg of the ground and carefully mixed sample into a 300-ml Erlenmeyer flask. Add 80 ml of Scharrer and Kurschner's reagent, and boil under reflux for 90 minutes. Transfer the residue to a Gooch crucible (outside diameter 42 mm) containing a layer of about 5 g of asbestos that has been boiled with hydrochloric acid, washed with water until free from chloride and then ignited for several hours at about 900" C in a muffle furnace. Successively wash the residue, by percolation, with some of Scharrer and Kurschner's reagent, with water until free from acid and then with two 25-ml portions of acetone.Use this sample for the determination of cellulose plus household coal. Similarly treat another sample of the ground compost, but use a sintered-glass crucible (porosity No. 4) instead of the Gooch crucible. PROCEDURE FOR DETERMINING CELLULOSE plus COAL- Dry the Gooch crucible containing the washed residue overnight a t 105" C, weigh, and heat in a muffle furnace at about 900" C for some hours. Allow to cool in an desiccator, and re-weigh; the loss on ignition, I , represents the cellulose plus coal in the sample. Calculate the content of cellulose plus household coal ( A ) in the compost from the expression- 100 l? A (uncorrected), yo = - 0.5 ' PROCEDURE FOR DETERMINING CELLULOSE- Place the sintered-glass crucible containing the residue from pre-treatment of the second portion of sample in a wide-necked Erlenmeyer flask, and add 40ml of 15 per cent.w/w sulphuric acid and 25 ml of 2 N potassium dichromate. Cover the neck of the flask with a watch-glass, and heat for 90 minutes in a bath of boiling water, with intermittent shaking. Concurrently, carry out a blank experiment. When cool, remove the crucible from the flask, rinse it carefully and add the rinsings to the contents of the flask. Wash the sintered- glass plate of the crucible, by suction, and again add the washings to the contents of the flask. Transfer the solution to a 250-ml calibrated flask, dilute to the mark, and care- fully mix.By pipette, add 25 ml of this solution to 25 ml of 0.22 N ferrous sulphate in a 250-ml beaker, add a few drops of the indicator solution, and titrate the excess of ferrous sulphate with 0.1 N potassium permanganate until the colour changes from green to violet. Let the titre found minus the blank titre be b, and calculate the uncorrected content of cellulose in the sample (B) from the expression- b x N x 10 x 0.003 x 1.12 x 2-25 x 100 0.5 B, % = = 15.12 Nb.824 MEBIUS : THE ESTIMATION O F CELLULOSE [Vol. 86 The content of household coal in the sample is the difference between A and B, and the corrected percentage of cellulose is 1.08 B. APPLICATION OF THE METHOD The proposed method was applied to samples of seven different batches of town-refuse No analysis of variance was carried out compost; the results are summarised in Table IV.Sam- TABLE IV CELLULOSE AND HOUSEHOLD-COAL CONTENTS OF DIFFERENT COMPOSTS All results are expressed on the dry basis for the original sample Un- Loss on ignition Carbon found by corrected after treatment House- Corrected dichromate method cellulose with Scharrer hold- cellulose multidied bv content* and Kurschner’s coal content ple Sample designation 1.12 (A), ’ No. % (B) reagent (C), content,t (B x 1.08), % % % % 1 Schiedam No. 5; fresh . . 5.21, 4-99 11.48 (mean 5.10) (mean 3-53) (mean 1-74) (mean 3-70) (mean 2-23) (mean 11.87) (mean 4.95) 2 Venlo No. 1; fresh . . 3.48, 3-58 7.94 3 Venlo No. 7; fermented 1.68, 1.79 3.92 4 Venlo No. 8; fresh . . 3.60, 4-05, 3.46 8.33 5 Vam; fermented .. 2.23, 2.23 5.02 6 Delft; fresh . . . . 10.75, 13.09, 11.76 26-70 7 Delft; fermented . . 6-08, 4.71, 5.07 11.14 19-23, 19.20 7.7 12.4 (mean 19.21) 17-57, 17-73, 17.03 9.5 8.6 (mean 17-44) 18.11, 17.91 14.1 4.2 (mean 18-01) 28-28, 26-11 17.9 9.0 (mean 26.20) 30.12, 31-48 25.8 5.4 (mean 30.80) 35.87, 35-87 9-2 28.8 (mean 35.87) 32.44, 29.25, 30.37 19.6 12.0 (mean 30.69) * Mean value in column A multiplied by 2.25. t Mean value in column C minus value in column B. on these results, as the number of replicate determinations was too small, but it can be seen that the spread was significant, since town-refuse composts are not particularly homo- geneous. From the results in Table IV, some other figures indicating the qualities of the composts have been derived, and these are shown in Table V.TABLE V PROPERTIES OF ANALYSED COMPOSTS (DERIVED FROM RESULTS IN TABLE IV) All results are expressed on the dry basis Loss on Useful Organic Cellulose content Sample Corrected Household- ignition of organic- matter other of useful No. (see cellulose coal untreated matter? than cellulose organic matter Table IV) content 1 12.4 2 8.6 3 4.2 4 9.0 5 5.4 6 28.8 7 12.0 % A), content % 7.7 9.5 14.1 17.9 25.8 9.2 19-6 B), sample (C),* content (D), (D - A), (100 A/D), % % % % 39.9 32.2 19.8 38.5 30.5 21.0 12.4 41-0 27-3 13.2 9.0 31-8 39.5 21.6 12.6 41-7 37.2 11.4 6-0 47.4 58.1 48-9 20.1 58.9 35.7 16.1 4.1 74.5 * Corrected for carbon dioxide from carbonates. t Organic matter considered useful as manure; i t is gradually disintegrated by microbes and gives rise to humus, The figure is derived by subtracting the value in column B from that in column C. The figures in column C of Table V represent the total combustible matter present in the samples, and the remarkably high variability of the household-coal content is mainly due to the difference between winter and summer batches of compost. The high content of cellulose in the organic matter, even for old fermented samples, is surprising, but the decreaseDecember, 19611 AND HOUSEHOLD COAL IN TOWN-REFUSE COMPOST 825 in cellulose content during fermentation of the fresh refuse is sufficiently evident to as be indicative of the extent of disintegration during fermentation. Although the proposed method is reliable and can apparently provide valuable informa- tion, the results should still be compared with those found by Gerretsen and Campen’s met h0d.l I thank Dr. F. C. Gerretsen for suggesting the study of this problem and for his valuable advice and criticism. REFERENCES 1. 2. 3. Gerretsen, F. C., and Campen, W. A. C., Swiss Review of Hydrology, 1958, 20, 331. Scharrer, K., and Kurschner, K., Tierernuhrung, 1932, 3, 302. Kurmies, B. Z., Pfl. EmtihrDiing., 1949, 44, 121. Received June 19th, 1961
ISSN:0003-2654
DOI:10.1039/AN9618600821
出版商:RSC
年代:1961
数据来源: RSC
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A routine method for determining caffeine in coffee and coffee mixtures |
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Analyst,
Volume 86,
Issue 1029,
1961,
Page 825-828
Lee Kum-Tatt,
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PDF (369KB)
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摘要:
December, 19611 AND HOUSEHOLD COAL IN TOWN-REFUSE COMPOST 825 A Routine Method for determining Caffeine in Coffee and Coffee Mixtures BY LEE KUM-TATT (Government Department of Chemistry, Outram Road, Singapore) A spectrophotometric method is described for determining caffeine in coffee ; the base-line procedure is used. Interfering impurities are removed from the samples by preferential extraction of caffeine with chloroform from an alkaline solution and subsequent passage of the extract through a column of activated alumina. Results obtained by this method compare favourably with those found by the official Bailey - Andrew procedure. The caffeine contents of coffees containing chicory are found by determining the nitrogen contents of the chloroform extracts. Simplicity and accuracy are the outstanding characteristics of the method.COFFEES are usually blended or adulterated with maize or chicory, and the aqueous extract and caffeine content of a sample usually give good indication of the degree of adulteration, In a control laboratory, many samples of coffee mixtures are analysed daily for caffeine, and for many years the Power - Chestnut1 and Bailey - Andrew2 methods recommended by the Association of Official Agricultural Chemists were used in this laboratory; these methods are satisfactory, but excessively time-consuming. Ishler, Finucane and Borker3 described a spectrophotometric method for determining caffeine in coffee. They removed interfering impurities, such as trigonelline and chlorogenic acid, by treatment with heavy magnesium oxide and zinc ferrocyanide and sometimes also by oxidation with permanganate before the aqueous extracts were analysed spectrophotometrically.This procedure gave inconsistent results, particularly when applied to coffee mixtures, when oxidation by permanganate must be used. Because of these limitations, a routine method for determining caffeine in coffee was sought. DEVELOPMENT OF METHOD It was hoped that complete extraction of caffeine from coffee could be effected by heating the sample under reflux with chloroform in the presence of alkali. This extraction procedure has the advantage that interfering substances, such as chlorogenic acid and trigonelline, are removed, as the former is “fixed” by the alkali and the latter is insoluble in chloroform.Other chloroform-soluble interfering substances were expected to be removed by passing the chloroform extract through a column of activated alumina. Studies of the ultra-violet absorption spectra of the diluted chloroform extracts showed that, except for those of samples826 LEE KUM-TATT: A ROUTINE METHOD FOR DETERMINING [Vol. 86 containing chicory, all the spectra had maxima at 277 mp and were similar to that of caffeine itself. However, when the caffeine contents of these samples were calculated directly from the absorption at 277 mp, the results were considerably higher than those obtained for the same samples by the official Bailey - Andrew procedure (see Table I). TABLE I CAFFEINE CONTENTS FOUND BY VARIOUS METHODS Caffeine content found by- A f > spectrophotometry without calculation Number of background correction- from Bailey - No.by each method in chloroform, in water, content, method, n Sample determinations 1 nitrogen Andrew % % Yo % Roasted Goflee- 1 3 1-94 2.01 1.70 1-60 2 3 1-87 1.84 1-52 1.45 Coffee mixed with maize- 1 3 1-15 1.19 1-07 2 3 0.94 1.01 0-93 1.00 0.88 Coffee mixed with chicory- 1 4 2 4 2.35 1.30 1-12 1-08 2-46 1.34 1-15 1.12 It was suspected that the interfering substances might be chloroform-soluble, and attempts were made to remove them by evaporating the chloroform extracts and dissolving the residues in water before spectrophotometry. Again, all the spectra except those from the samples containing chicory had maxima at 273 mp and were similar to that of pure caffeine. The caffeine contents calculated directly from the absorption a t 273 mp agreed closely with those obtained from the chloroform extracts, except for the samples containing chicory (see Table I).These results indicated the existence of some irrelevant absorption, and this was confirmed by determining the nitrogen contents of the chloroform extracts, the values of which are also shown in Table I. Attempts were made to destroy these interfering sub- stances by oxidation with permanganate in neutral medium as described previ~usly,~ but without success. The fact that the maxima and minima of the spectra agreed closely with those of pure caffeine suggested that the spectra of the interfering substances were linear, or nearly so, and a study of extracts (in chloroform and water) obtained by the proposed procedure from roasted maize confirmed this suggestion.Effects of background absorption can be minimised by using the base-line procedure successfully employed by Morton and Stubbs4 and McGillivrayG for determining vitamin A in fish oils. Willits, Swain, Connelly and Brice6 applied the same procedure to the determination of nicotine in tobacco. Investigation has shown that this procedure can be applied successfully to both chloro- form and aqueous extracts of coffee, and the results are in good agreement with those found by a modified version of the Bailey - Andrew procedure7 (see Table 11). This has led to the adoption of the method described below. PROCEDURE- Weigh 1.0 g of roasted coffee or 0.5 g of soluble coffee, transfer to a 150-ml flask containing 3 ml of a 10 per cent.solution of ammonium hydroxide, add 80 ml of chloroform, and heat under reflux for 30 minutes. Pour the contents of the flask into a funnel plugged with cotton- wool, and allow the filtrate to run directly on to a column consisting of 10 g of alumina (previously heated to 800" C for 6 hours) packed in a 100-nil burette. Rinse the flask with more chloroform, pour the rinsings on to the column, and collect the eluate in a 200-ml calibrated flask. Collect about 120 to 150ml of eluate, which normally contains all the caffeine in the sample, and dilute to the mark with chloroform. By pipette, place a 5- or IO-ml portion of eluate in a 50-ml calibrated flask, dilute to the mark with chloroform, and calculate the caffeine content of the sample from the optical-density readings for this solution a t 257, 277 and 297 mp.METHODDecember, 19611 CAFFEINE IN COFFEE AND COFFEE MIXTURES 827 SPECTROPHOTOMETRIC DETERMINATION OF CAFFEINE IN AQUEOUS SOLUTION- Evaporate a 5- or 10-ml aliquot of the chloroform solution on a steam-bath, dissolve the residue in water, transfer the solution to a 50-ml calibrated flask, and dilute to the mark. Measure the optical density of this solution at 250, 273 and 296mp, and hence calculate the caffeine content of the sample. DETERMINATION OF NITROGEN CONTENT OF CHLOROFORM EXTRACT- In the digestion flask place approximately 1.50 g of potassium sulphate and 40 mg of mercuric oxide, add a few beads to prevent “bumping” and rinse the neck of the flask with 3 ml of chloroform.Place the flask on a digestion rack, and continue as described by the A.0.A.C.8; use 0.01 N acid, 1 ml of which is equivalent to 0.485 mg of caffeine. Concentrate the extract to less than 10 ml by evaporation or distillation. CALCULATION- The values of EYi:*% for a solution of pure caffeine are determined at the wavelengths of maximum absorption and of points on the ascending and descending portions of the curve equidistant from the maximum. Let these values be M, A and D, respectively, and let the corresponding values for the test solution at the same wavelengths be M’, A’ and D’. The wavelengths at which the absorption of caffeine is measured in chloroform and in aqueous solution are shown below. A M D Wavelength for aqueous solution, mp . . 250 273 296 Wavelength for chloroform solution, mp .. 257 277 297 The percentage of caffeine in the sample (P) can be calculated from the equation- M’ - $ (A’ + D’) 200 50 M - 8 (A + D) xv O T O G P = in which 200 ml is the total volume of chloroform solution collected from the column, u ml is the aliquot of the chloroform extract used, 50ml is the volume to which the aliquot is diluted and w is the weight of sample used (in grams). When a Hilger spectrophotometer and l-cm cells are used, the values of [M - 4 (A + D)] for a 0.001 per cent. solution of caffeine in chloroform and in water are, respectively, 0.430 and 0.415. These factors can be used in routine determinations, but for more accurate work they should be found independently in order to allow for differences between instruments, in absorption characteristics and, particularly, between the light paths of cells.Number of Sample determinations No. by each method Roasted coflee- 1 10 2 10 3 3 4 3 Coffee mixed with maize- 1 10 2 10 3 3 4 3 1 12 2 5 Coffees mixed with chicory- TABLE I1 COMPARISON OF RESULTS Caffeine content found by- spec t ropho tome try with calculation background correction- from Bailey - in chloroform, in water, content, method, A f 1 h I \ nitrogen Andrew % % Yo % 1-59 1.60 1-70 1-60 1-41 1-48 1.62 1 *s5 1.88 1.92 1-90 1.87 1.32 1.30 1.40 1-34 1.02 1.07 1.1 2 1.00 0.89 0.88 0.93 0.88 0.7 1 0-73 0.8 1 0.7 1 0.92 0.94 0.99 0.89 - - 1-12 1-08 - 1-15 1.12 Soluble coflee- 1 4 3.49 3.43 3-62 3.53828 LEE KUM-TATT [Vol. 86 COMPARISON OF METHODS Samples of each type were analysed by the proposed method, by determining the nitrogen content of the chloroform eluate and by the modified Bailey - Andrew procedure’; the results are shown in Table 11.It can be seen that the proposed method gives results for both chloro- form and aqueous solutions in close agreement with those found by the modified Bailey- Andrew method. Results for caffeine calculated from the nitrogen contents of the chloroform eluates are generally slightly high, but this procedure can be used, if necessary, for checking results by the proposed method. It is particularly useful for samples containing chicory, to which the spectrophotometric method cannot be applied, and results so obtained for such samples are in excellent agreement with those found by the modified Bailey - Andrew pro- cedure.The nitrogen contents of several samples of chicory and maize extracts were determined, and it was found that the “caffeine” contents of these samples, as calculated from the nitrogen values, were not greater than 0.06 mg per g. To ascertain the effectiveness of the extraction procedure, known amounts of caffeine were added to some samples, and the recoveries are shown in Table 111. After the completion of this work, my attention was directed to a paper on the spectro- photometric determination of caffeine in roasted ~offee,~ in which the same extraction pro- cedures were used, but without background correction. TABLE I11 RECOVERY OF CAFFEINE FROM COFFEE BY PROPOSED METHOD Caffeine content found by- proposed method Bailey - Andrew Sample No.Weight of sample, Caffeine found, (chloroform extract), method, A I \ g * g % % 1.009 + 6 mg of caffeine 20.9 1.59 - 1 1.000 10.3 1-03 1.00 1.008 + 5 mg of caffeine 15.2 1.02 - Roasted coffee- 1 1.009 15.8 1.58 1-66 Coffee mixed with maize- CONCLUSIONS The proposed method fulfils the requirements of a routine method for determining caffeine in coffee. The extraction and dilution procedures are simple and require no special technique or constant attention. The method does not involve use of any special reagent, nor does it include tedious filtration or extraction procedures. Unlike methods involving oxidation of interfering substances by per~nanganate,~ critical control of pH is not necessary. The method was applicable to all types of coffee studied, except those containing chicory, for which the chloroform extract is evaporated and the amount of caffeine present determined from its nitrogen content.Results by the proposed method are in good agreement with those obtained by the official procedure, and one analyst can make six to eight assays in an &hour day. I thank Miss P. R. Williams, Messrs. S. C. Pwee, Y. H. Ho, and P. S. Chan for technical assistance and Dr. Loke Kwong Hung, Biochemistry Department, University of Malaya, for reading the manuscript. I also express my appreciation to the Chief Chemist, Mr. Chia Chwee Leong, for his interest in this work. REFERENCES 1. Honvitz, W., Editor, “Official Methods of Analysis,’’ Eighth Edition, The Association of Official 2. - , Editor, 09. cit., p. 238. 3. Ishler, N. H., Finucane, T. P., and Borker, E., Anal. Chem., 1948, 20, 1162. 4. Morton, R. A., and Stubbs, A. L., Analyst, 1946, 71, 348; Biochem. J., 1948, 42, 196. 5. McGillivray, W. A., Anal. Chem., 1950, 22, 494. 6. Willits, C. O., Swain, M. L., Connelly, J. A., and Brice, B. A., Ibid., 1960, 22, 430. 7. Borker, E., J . Ass. Off. Agric. Chem., 1960, 43, 620. 8. Horwitz, W., Editor, op. cit.. p. 805 (section 37.9). 9. Polzella, L., Boll. Lab. Chim. Prov., 1961, 12, 23. Agricultural Chemists, Washington, D.C., 1955, p. 238. Received May 24th, 1961
ISSN:0003-2654
DOI:10.1039/AN9618600825
出版商:RSC
年代:1961
数据来源: RSC
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