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The cardinal principle of like attracting like generates many ubiquitous oligopeptides shared by divergent proteins

 

作者: S Ohno,  

 

期刊: Animal Genetics  (WILEY Available online 1994)
卷期: Volume 25, issue S1  

页码: 5-11

 

ISSN:0268-9146

 

年代: 1994

 

DOI:10.1111/j.1365-2052.1994.tb00397.x

 

出版商: Blackwell Publishing Ltd

 

关键词: ubiquitous oligopeptides;peptide palindromes

 

数据来源: WILEY

 

摘要:

AbstractActual protein amino acid sequences are very different from random assemblages of 20 varieties of amino acids. The separate survey of 20 unrelated proteins in two steps that included eight of the 18 discussed in this paper, revealed that at the level of 5000 total residues, one out of every 32 tetrapeptides appeared in two or more identical copies, whereas at the level of 10 000 total residues, the frequency was elevated to one out of every 29. It would thus appear that only 60 000 or so, out of the possible 160 000 (204) varieties of tetrapeptides, are regularly used by all proteins. These shall be defined as ubiquitous tetrapeptides. Those tetrapeptides occasionally found to be stray which did not belong to the above group of 60 000 must have been generated by new mutations. Thus, they are expected to return to the group by subsequent mutations.The above ubiquity is due to the cardinal principle of protein construction which is like attracting like. On the average, 28% of each residue is devoted to the formation of homodipeptides such as Leu‐Leu, Asn‐Asn and Trp‐Trp. Consequently, homo‐oligopeptides, pentapeptidic and longer, are readily found in two or more proteins unrelated to each other. The next in line among the ubiquitous oligopeptides are those made of similar residues. They usually contain palindromic cores such as Leu‐Val‐Leu, Ala‐Gly‐Ala and Lys‐Arg‐Lys. For example, the hexapeptide Ala‐Gly‐Ala‐Asp‐Ala‐Ala is shared between human phosphofructokinase and bacterial cytochrome C. Provided that they are longer than 60 residues, all proteins contain repeating oligopeptides, tetrapeptidic to heptapeptidic in length. The above principle of like attracting like is the very reason that hydropathic profiles of most proteins readily yield alternating stretches of hydroph

 

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